Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq7 176 6e-38
seq5 105 1e-16
>seq7
Length=1585612
Score = 176 bits (194), Expect = 6e-38
Identities = 274/384 (71%), Gaps = 6/384 (2%)
Strand=Plus/Plus
Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953
||| |||| || ||| ||||| ||| ||||| ||||| ||||||||| | || ||
Sbjct 1400713 CACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCG 1400771
Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013
|| | |||||||| | || ||||| |||| || ||||| ||||||||| ||
Sbjct 1400772 ATTCAGTGGTGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 1400831
Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073
|| ||||| || || || |||||||| ||||| |||||||| ||| ||||||| || |
Sbjct 1400832 GGAGAACATTCATTCCGAGACCTACTCCCTCCTTATCGACACATACATCAAGGAGCCCGC 1400891
Query 1456074 CGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132
| || | ||| | ||||| |||||| || || | || | | | || ||||| |
Sbjct 1400892 CCAGC-GAACCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTG 1400950
Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192
||||||| || |||||| | | ||| | || | ||||||| |||| ||||| |
Sbjct 1400951 ACTGGGCCATCCGATGGATCCAGGATAAGGAC-TCCTC-CTTTGCCCAGCGTCTCGTTGC 1401008
Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251
|||||| || || ||||| ||||| ||| || ||| | | ||||| ||||||||
Sbjct 1401009 CTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAA 1401068
Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||| || |||||||| |||||
Sbjct 1401069 GAAGCGTGGTCTCATGCCTGGTCT 1401092
>seq5
Length=2590615
Score = 105 bits (116), Expect = 1e-16
Identities = 178/258 (69%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984
||||||||||| ||||||||||| || | || || || || ||||| || | ||
Sbjct 1619338 CCCACGCTCTTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 1619279
Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044
||||||| ||| || ||||| ||||| || || |||||| || || | ||||||
Sbjct 1619278 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 1619219
Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104
||| ||| || || || ||| | | ||| | || || | ||| | ||| |
Sbjct 1619218 AAGATGGCTGGTGGTATTGGTCTAAATGTGCACCGTATTCGTGCTACTGGCTCATACATC 1619159
Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164
|| || |||||||| || || || |||| || |||||||| || || ||| ||||
Sbjct 1619158 GCCGGTACCAACGGTACATCGAATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 1619099
Query 260165 GCGCGCTACGTCGACCAG 260182
|| || || |||||||||
Sbjct 1619098 GCTCGGTATGTCGACCAG 1619081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177796442868786
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |