Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq5 172 8e-38
>seq5
Length=2590615
Score = 172 bits (190), Expect = 8e-38
Identities = 554/851 (65%), Gaps = 14/851 (2%)
Strand=Plus/Plus
Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410
||| || || || || | || || ||||| ||||||||| |||||||| || || ||
Sbjct 1618676 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAA 1618735
Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470
|| | || || ||| |||| | |||| ||| | | ||||| | ||| || ||
Sbjct 1618736 TGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAGCTTCTGAGCCTTGAT 1618795
Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCA 69525
| |||||| || ||| ||| || || || | | ||| | |||| ||||| ||
Sbjct 1618796 T---GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACTCC 1618850
Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585
||||| | || | | ||||| || || || |||||||||| || ||| || |
Sbjct 1618851 TCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCG 1618910
Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645
| | | ||| || ||||| || ||||| || |||||||| || | || ||||| | |
Sbjct 1618911 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGATCACGG 1618970
Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705
| | || || || || || || ||||| || || || | | ||||||
Sbjct 1618971 GCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAG 1619030
Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765
||||| || || || || || || | | || ||||| || || || ||||| || |
Sbjct 1619031 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACA 1619090
Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825
|| | |||||||| || |||| | ||||| |||| || |||||| ||| |||| ||
Sbjct 1619091 TACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTG 1619150
Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885
|| || | || || || | || |||||| | | |||||| || || ||
Sbjct 1619151 GTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCA 1619210
Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945
||||| || ||||| | ||||| || | || || || || ||||| || || ||
Sbjct 1619211 GCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCG 1619270
Query 69946 TCTATCATGTTAAG-AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAA 70004
|| |||| | || ||||| || | |||| ||| | || || || ||||| ||
Sbjct 1619271 TCCTTCATATCAACCAAGAAGCAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCATTGAA 1619329
Query 70005 TAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGC 70064
| || || || || || ||||| | || ||| | |||||||||||| || | |
Sbjct 1619330 GAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAAGAC 1619389
Query 70065 TGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123
| || ||||| ||| | || || | | |||||||| | ||| |||||||| |
Sbjct 1619390 TCGCTCGATATCATCACCCCAG-ATACCAACAGACACACGCATGATCATGTGCTGAGGGC 1619448
Query 70124 GTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAA 70183
| || || | ||| | || || | ||||||||| |||| ||| || || ||||
Sbjct 1619449 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 1619508
Query 70184 AATAGTTGTAT 70194
| || | ||||
Sbjct 1619509 AGTATTGGTAT 1619519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686907486286920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |