Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 172 8e-38 >seq5 Length=2590615 Score = 172 bits (190), Expect = 8e-38 Identities = 554/851 (65%), Gaps = 14/851 (2%) Strand=Plus/Plus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || || || || | || || ||||| ||||||||| |||||||| || || || Sbjct 1618676 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAA 1618735 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || | || || ||| |||| | |||| ||| | | ||||| | ||| || || Sbjct 1618736 TGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAGCTTCTGAGCCTTGAT 1618795 Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCA 69525 | |||||| || ||| ||| || || || | | ||| | |||| ||||| || Sbjct 1618796 T---GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACTCC 1618850 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 ||||| | || | | ||||| || || || |||||||||| || ||| || | Sbjct 1618851 TCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCG 1618910 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645 | | | ||| || ||||| || ||||| || |||||||| || | || ||||| | | Sbjct 1618911 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGATCACGG 1618970 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705 | | || || || || || || ||||| || || || | | |||||| Sbjct 1618971 GCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAG 1619030 Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765 ||||| || || || || || || | | || ||||| || || || ||||| || | Sbjct 1619031 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACA 1619090 Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 || | |||||||| || |||| | ||||| |||| || |||||| ||| |||| || Sbjct 1619091 TACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTG 1619150 Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885 || || | || || || | || |||||| | | |||||| || || || Sbjct 1619151 GTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCA 1619210 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945 ||||| || ||||| | ||||| || | || || || || ||||| || || || Sbjct 1619211 GCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCG 1619270 Query 69946 TCTATCATGTTAAG-AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAA 70004 || |||| | || ||||| || | |||| ||| | || || || ||||| || Sbjct 1619271 TCCTTCATATCAACCAAGAAGCAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCATTGAA 1619329 Query 70005 TAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGC 70064 | || || || || || ||||| | || ||| | |||||||||||| || | | Sbjct 1619330 GAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAAGAC 1619389 Query 70065 TGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 | || ||||| ||| | || || | | |||||||| | ||| |||||||| | Sbjct 1619390 TCGCTCGATATCATCACCCCAG-ATACCAACAGACACACGCATGATCATGTGCTGAGGGC 1619448 Query 70124 GTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAA 70183 | || || | ||| | || || | ||||||||| |||| ||| || || |||| Sbjct 1619449 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 1619508 Query 70184 AATAGTTGTAT 70194 | || | |||| Sbjct 1619509 AGTATTGGTAT 1619519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907486286920