Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 242 5e-59 seq7 131 2e-25 seq1 91.5 2e-13 >seq5 Length=2590615 Score = 242 bits (268), Expect = 5e-59 Identities = 1149/1791 (64%), Gaps = 57/1791 (3%) Strand=Plus/Plus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| |||||| Sbjct 1617684 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 1617743 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || ||||||| || | || | ||||| | || |||| |||||| || Sbjct 1617744 TTGAGGCCAAGTTTCCA-GCCTGCAAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTC 1617802 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 1617803 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 1617860 Query 110501 ATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATA 110557 || | || ||| || || | || ||||| || || || ||| ||||| Sbjct 1617861 ATCTGAACGAC---CTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACG 1617917 Query 110558 TCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTC 110617 || | ||||| | | || ||||| |||||||| | | | ||| | | |||| Sbjct 1617918 TCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTC 1617977 Query 110618 ATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATG 110677 ||| | | |||||| ||||| || | ||||| |||| || |||||||| Sbjct 1617978 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 1618037 Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737 |||||||| ||||| | | ||||||| || | ||||| || || ||||| Sbjct 1618038 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 1618097 Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 110797 || || ||||||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 1618098 TCGTTGTTACCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 1618157 Query 110798 TTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--A 110852 ||||| | || | ||||| ||||| ||| | |||||||| || | | Sbjct 1618158 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 1618214 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCT 110912 | ||||| || |||| ||||||||||||| || | || | || ||||| ||||||| Sbjct 1618215 GAG-GGTTTGACGTTCC-ACATGTCAAACTGGAGGATACCCTCAGAGGCGGGGGAACCCT 1618272 Query 110913 CAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCG 110971 ||||| |||| ||| | | | ||||| | ||| | || |||| ||| Sbjct 1618273 TGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCG 1618331 Query 110972 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 111031 ||||| ||||| || ||||| | || | ||| || || ||| || || | | Sbjct 1618332 TGATAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGG-G 1618390 Query 111032 TAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 | ||| | || || |||| ||||| || |||||||||| |||||| |||| ||| Sbjct 1618391 CATACGCAGAGCAAGGAAAGCATCGGCGAGGCCCTGAACACCCAGACCAATGGGTCGGTG 1618450 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 111150 ||||| ||| || || || || || || || || || |||| ||| Sbjct 1618451 GCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTT 1618510 Query 111151 TAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAG 111209 | || |||||| || ||| | || || || || | | || | || || Sbjct 1618511 CAAGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAG 1618566 Query 111210 TCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 || || | ||| | || || | | || || | ||||| ||||| || Sbjct 1618567 CTTCATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCT 1618626 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 | || | | |||||| | |||||| || || | |||||| || || || || | Sbjct 1618627 CGTCAGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGA 1618686 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||||||||||| ||||| ||| || |||||||||||||||||| | || | || | Sbjct 1618687 GGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 1618746 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG 111445 |||| ||||| | | |||||| || | ||||| | || | | || | | || | | Sbjct 1618747 TCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGC 1618803 Query 111446 GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 111503 | || | |||||| |||||||||| ||| || || || |||||||| || || Sbjct 1618804 GACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGT 1618863 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCC 111563 ||| ||| || || || || ||||| | || | ||| | ||| | ||||| | Sbjct 1618864 CGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACAC 1618923 Query 111564 GCTTCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCT 111620 ||||||||||||| || || ||||| ||| || |||| ||||| | ||| || ||| Sbjct 1618924 GCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAA--AGATCACGGGCACGGA-CCT 1618980 Query 111621 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 111680 | || | ||| ||||| || | |||||||| || | || ||| | |||||| |||| Sbjct 1618981 CCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCT 1619040 Query 111681 CAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTG 111737 | || |||| || | || || ||| ||| | || | ||||| || || | Sbjct 1619041 CGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAG 1619100 Query 111738 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA 111796 || ||| || || |||||||| |||| || ||||| ||| ||| || || || ||| Sbjct 1619101 TGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGA 1619160 Query 111797 -ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTT 111855 || ||| | | || | | | || | | | |||||||| |||||| ||| Sbjct 1619161 TGTATGAG--CCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTT 1619218 Query 111856 TGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTT 111915 ||||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 1619219 GGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCAT 1619278 Query 111916 GGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGG 111975 | | | ||||||| |||| || || || || || ||||||||||| || || Sbjct 1619279 ATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGG 1619338 Query 111976 TGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCA 112033 | || || ||| | | |||| |||||| | ||||||||||||||| || Sbjct 1619339 GGAAGCATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCG 1619396 Query 112034 ATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || || ||| || | | || ||||||| ||||| ||| ||| Sbjct 1619397 ATATCATCACCCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGG 1619447 >seq7 Length=1585612 Score = 131 bits (144), Expect = 2e-25 Identities = 334/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| ||| ||||| ||||| |||||| Sbjct 1401434 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATA 1401375 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | || || | | | | || |||| |||| Sbjct 1401374 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 1401320 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 ||||||| | || |||||||||||| ||| ||||||||||| |||| |||| Sbjct 1401319 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 1401260 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| || || || || || |||| | | |||||| || || || | | ||| Sbjct 1401259 CACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 1401200 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | ||||| | | || ||| | | || | || | || ||| || | ||| Sbjct 1401199 CCTGGATCATCTGCTTACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CATG-CAA 1401143 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| |||||||| || || || || || || || ||||| ||||| |||| Sbjct 1401142 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCA 1401083 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| | |||| | ||| | || |||||||||||||| Sbjct 1401082 TGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCT 1401023 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCAT 122841 | ||| ||||| |||| || || | ||| |||||| ||| ||| | | | |||| Sbjct 1401022 CAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCAT 1400964 Query 122842 TTCATTGCCCATTTCGCCTTCTT 122864 || ||||| | |||||||| Sbjct 1400963 CGGATGGCCCAGTCAGCCTTCTT 1400941 >seq1 Length=6144005 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||| ||||| ||| |||||| ||| | || || | Sbjct 2285681 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 2285740 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| ||||||| ||| | |||||||| || || Sbjct 2285741 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 2285800 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| |||| || ||||| || |||||||| || |||||| Sbjct 2285801 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 2285853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030798888800