Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 201 1e-46 seq7 163 4e-35 seq2 86.0 8e-12 >seq5 Length=2590615 Score = 201 bits (222), Expect = 1e-46 Identities = 1094/1723 (63%), Gaps = 51/1723 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 1617691 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 1617750 Query 117865 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923 | | |||||| | | || | ||||| || | |||| | || || | |||| Sbjct 1617751 CAAGTTTCCAGCC-TGCAAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 1617809 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 1617810 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 1617869 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || | | ||| ||||| |||||| |||| || ||| | || | ||||| Sbjct 1617870 ACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATG 1617929 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 118103 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 1617930 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 1617989 Query 118104 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 118163 || ||||| || | || |||| | || |||||||| |||||||| Sbjct 1617990 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 1618049 Query 118164 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 118223 ||||| || | | |||||||||| ||||| ||||| |||||||| ||||||||| Sbjct 1618050 GCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTACCC 1618109 Query 118224 AAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 118283 | || |||| || ||| || ||||| || || | ||| || |||||||||| || Sbjct 1618110 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 1618169 Query 118284 TTTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341 | | | | | | | | || || ||| |||||||| || | | | | | Sbjct 1618170 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGTTTGACGT 1618227 Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 |||||| ||||||||||||||||| | || || || || |||| || || || | Sbjct 1618228 TCCACATGTCAAACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGG 1618287 Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 | ||||| ||| |||| | ||||| || |||||| |||||||| || || | Sbjct 1618288 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAAATGGTCT 1618344 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 118517 | || || | || | | |||||| || || || | | || || | | Sbjct 1618345 CGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-CAGAGCA 1618403 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | || |||| ||||| || || ||||| || ||||| || || || | ||| ||| Sbjct 1618404 AGGAAAGCATCGGCGAGGCCCTGAACACCCAGACCAATGGGTCGGTGGCGCATGTTACTG 1618463 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| || || || || ||| |||||| | | | || | || | Sbjct 1618464 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAAGTTGCGAATA 1618523 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-AC 118696 ||||||| ||| | || | ||| | | | || | || || |||||| | | Sbjct 1618524 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAG---CTTCATCGTAG 1618577 Query 118697 ATACTTAGGAAGGGCG-----ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 | | | | ||||| | || || || || || |||| | ||| || | || Sbjct 1618578 TTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCA 1618637 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||| |||||||| ||||| | ||| || || ||||| || | ||||||||| Sbjct 1618638 CAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG 1618697 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| |||||| ||||||||||| |||||| |||| | || ||||| || ||| Sbjct 1618698 TTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGG 1618757 Query 118872 GACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGG---CTCGCCC 118927 | || |||||| || | ||| | | || | || | | || | | | || | || Sbjct 1618758 GCCTCGAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGACCCTTG-CC 1618813 Query 118928 CTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCC 118987 ||| | |||||||||| ||| || || || ||||| || || | || | ||| || Sbjct 1618814 CTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCC 1618873 Query 118988 TGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 119047 || || | || || | || | ||| | ||| || ||||| ||||||||||| Sbjct 1618874 AGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAA 1618933 Query 119048 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 119107 || || |||||||| || || ||| ||||| || || | || || | || || Sbjct 1618934 AAGATCAGGGATCCAAAGGGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTG 1618993 Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 || ||| | || | || || | || ||| | |||||| || || ||||| | || Sbjct 1618994 GTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGC 1619053 Query 119168 GATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAA 119221 | | || | ||| | | ||| |||||| ||||||| |||||| ||| || Sbjct 1619054 AAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATACCGAGCAGTGTTGTTGAA 1619110 Query 119222 TACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGAC 119279 ||||||||||| |||| | ||||| ||| || || || || ||| || ||| | Sbjct 1619111 GACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCC 1619170 Query 119280 TTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 119339 | | || | | | ||| | | | ||||||||| || ||| ||| ||||| Sbjct 1619171 --AGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGAGATCATG 1619228 Query 119340 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 119399 || || | ||||| | ||||||| || || || ||| |||| | | | | | Sbjct 1619229 GCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAG 1619288 Query 119400 AAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 ||||| |||| ||| ||| || || || || |||||||| || || | || || Sbjct 1619289 AAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGC 1619348 Query 119460 ATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC 119500 ||| | | |||| |||||| | ||| ||||||||||| Sbjct 1619349 GTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGAC 1619389 >seq7 Length=1585612 Score = 163 bits (180), Expect = 4e-35 Identities = 312/454 (69%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| ||||||||| Sbjct 1401434 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATA 1401375 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || | | | || | |||| |||||||| Sbjct 1401374 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-CCAAGAGCGACAAGGAGACG 1401316 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||||| ||| || |||||||| |||| |||| ||| Sbjct 1401315 ATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACA 1401256 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| ||| ||||||| || || || | ||| | || Sbjct 1401255 GGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTG 1401196 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | | | || | | ||| | || | || ||| || | |||| || Sbjct 1401195 GATCATCTGCTTACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CATG-CAAAGTC 1401139 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || ||||| |||||| |||||||| Sbjct 1401138 AGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAG 1401079 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 1401078 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAAC 1401019 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 | || || |||| |||||||| ||||||||| Sbjct 1401018 AGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG 1400985 >seq2 Length=4950538 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938 || |||||||||||| || ||||| |||||||| || |||||| || ||| ||| |||| Sbjct 3137822 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 3137763 Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998 | || || | || || |||||| |||| || ||| | | || | |||||||||||| Sbjct 3137762 GGAACCCGCCAACAGATGTCCAAAGATAAGCTCGGGAATGTAGATCTTCTCCTTTTCGTG 3137703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434017242680