Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq15 154 4e-32
seq1 152 2e-31
seq7 102 2e-16
>seq15
Length=769536
Score = 154 bits (170), Expect = 4e-32
Identities = 175/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | || |||||||| || || || || || || ||
Sbjct 351324 CATACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTC 351265
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| ||||| |||||||| || ||||| ||||| || || || ||||| ||
Sbjct 351264 GGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGG 351205
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685
|||||| || || || ||||| || || ||| || ||||||||||| | ||| |||| |
Sbjct 351204 AGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 351146
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| || |||| |||||||| || || || || || || || |||||
Sbjct 351145 CGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 351094
Score = 145 bits (160), Expect = 2e-29
Identities = 166/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || ||||| ||||| || || |||||||| || |
Sbjct 351100 TTTGCATACCACCACGGAGGCGGAGGACGAGATGGAGAGTGGATTCCTTTTGAATGTTGT 351041
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | | ||||| || ||||||||||| |||||||||||||| || || || || |
Sbjct 351040 AGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGTTGGT 350981
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
||||||| || || || || |||||||| || | || ||||| || || | ||| || |
Sbjct 350980 CAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCGGACG 350921
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||||| ||||| || | ||||| || || || || || ||
Sbjct 350920 ACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 350878
Score = 140 bits (154), Expect = 1e-27
Identities = 172/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||||||||||||||| ||||| || ||||| || |
Sbjct 350818 TTTGCATACCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGT 350759
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
||||||| | || || || || ||||| || || || || || || | |||||||| |
Sbjct 350758 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 350699
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| || | || || || ||||| | || || |
Sbjct 350698 CGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAG 350639
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || | ||||| ||||| | || || || || ||||||||
Sbjct 350638 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 350584
Score = 125 bits (138), Expect = 2e-23
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
||||| || |||||||| ||||| || || || || || || || || || ||||||
Sbjct 351533 AGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCT 351474
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| | || || ||||| ||||| |||||||||||||| || || || || || || |||
Sbjct 351473 TCCAACTGCTTACCAGCGAAGATAAGACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCC 351414
Query 140646 TGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704
||||| || ||| || || || || || | ||| | |||||| ||||| || | ||
Sbjct 351413 TGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGATTCAACCTCAAGGGTGATGGT 351355
Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||| || || || || || || ||||||||
Sbjct 351354 CTTTCCAGTAAGAGTCTTCACGAAGATCTGCAT 351322
>seq1
Length=6144005
Score = 152 bits (168), Expect = 2e-31
Identities = 441/672 (66%), Gaps = 9/672 (1%)
Strand=Plus/Minus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || |||| ||| | || |||||
Sbjct 3801252 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 3801193
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| ||||||||||| | || || || |||| ||| || || | || ||
Sbjct 3801192 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACCCTCAGAACACT 3801133
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTG 349439
|| || || || |||||| | || ||| | | || | || | | | || | |
Sbjct 3801132 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGGTTCAGG--CCG 3801075
Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499
|| | || ||||| || || | | || | | ||| |||| || || || || ||||
Sbjct 3801074 ATATGAAGCATTTCCCCTTCAAGATCGT-CGACAAG--GGTGGCAAGCCCATCATCGAGG 3801018
Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558
| || | || || || || || || || || || || || || | ||| | |
Sbjct 3801017 TCGAGTTCAAGGGCGAGACCAAGACC-TTCAGCCCTGAGGAGATCTCTGCTATGATCCTC 3800959
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
|| ||| || | ||||| | || | || || || || | | |||||| |
Sbjct 3800958 ACCAAGATGCGCGAGACCGCTGAGTCTTACCTTGGCGAGACTGTCAACAACGCTGTTGTG 3800899
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || ||||| || || || | |||||| || || || |||||||| |||
Sbjct 3800898 ACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAAGCCACCAAGGATGCTGGTCTCATC 3800839
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || ||||| |||| || || || || |||||||| || ||||| || ||
Sbjct 3800838 GCCGGTCTTAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCTGCCATTGCCTACGGT 3800779
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||| || | | ||| || || | || || || ||| | |||||||||||
Sbjct 3800778 CTTGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTCGATCTTGGTGGTGGTACC 3800719
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || || || |||| ||||| || || || || || | || || |||
Sbjct 3800718 TTCGATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGT 3800659
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||| || || || || || ||||| || || || ||||| ||
Sbjct 3800658 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTTAACGAG 3800599
Query 349919 TTTAAGCGTCAA 349930
|| |||||| ||
Sbjct 3800598 TTCAAGCGTAAA 3800587
Score = 116 bits (128), Expect = 1e-20
Identities = 192/276 (70%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260
|||||| | || || | | |||||| ||||||||| |||| ||| || |||||
Sbjct 3937963 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACTGC 3938022
Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320
||||||||| | ||| | |||||| |||| || |||||||| ||||| | ||||| ||
Sbjct 3938023 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTCGCTGGGAGTGAG 3938082
Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380
|||| | | || |||| | || || | || | || || | ||| | || ||
Sbjct 3938083 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 3938142
Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440
| ||||||||||| |||| || || ||| | ||||| || || || || ||| | ||
Sbjct 3938143 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 3938202
Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473
|||| |||| |||| |||||||| ||||||
Sbjct 3938203 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 3938235
Score = 98.7 bits (108), Expect = 3e-15
Identities = 102/133 (77%), Gaps = 3/133 (2%)
Strand=Plus/Plus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
||||||||||| | ||||| ||| || || | ||||| || || ||||| || ||
Sbjct 3937202 CGTGGCACACCGAGGGTAACGTTC---TTGGACGACACACCGGCGAAATGGAAGGTGTTC 3937258
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| ||||||||||| |||||||| || | ||| |||||||||||
Sbjct 3937259 AGTGTCATCTGGGTAGCTGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 3937318
Query 377578 CCAGGATTGACAA 377590
||||| |||||||
Sbjct 3937319 CCAGGGTTGACAA 3937331
>seq7
Length=1585612
Score = 102 bits (112), Expect = 2e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 344091 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 344032
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || ||||| || || || || ||||||||||| || || ||||| || ||
Sbjct 344031 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGG 343972
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || || || | || || | ||
Sbjct 343971 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 343912
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || |||||||||||
Sbjct 343911 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 343861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515251429627859
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |