Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq15 154 4e-32 seq1 152 2e-31 seq7 102 2e-16 >seq15 Length=769536 Score = 154 bits (170), Expect = 4e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || |||||||| || || || || || || || Sbjct 351324 CATACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTC 351265 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| |||||||| || ||||| ||||| || || || ||||| || Sbjct 351264 GGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGG 351205 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || || ||| || ||||||||||| | ||| |||| | Sbjct 351204 AGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 351146 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| |||||||| || || || || || || || ||||| Sbjct 351145 CGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 351094 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| ||||| || || |||||||| || | Sbjct 351100 TTTGCATACCACCACGGAGGCGGAGGACGAGATGGAGAGTGGATTCCTTTTGAATGTTGT 351041 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || ||||||||||| |||||||||||||| || || || || | Sbjct 351040 AGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGTTGGT 350981 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || |||||||| || | || ||||| || || | ||| || | Sbjct 350980 CAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCGGACG 350921 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| ||||| || | ||||| || || || || || || Sbjct 350920 ACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 350878 Score = 140 bits (154), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||||||||||||||| ||||| || ||||| || | Sbjct 350818 TTTGCATACCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGT 350759 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| || || || || || || | |||||||| | Sbjct 350758 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 350699 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || || || ||||| | || || | Sbjct 350698 CGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAG 350639 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| ||||| | || || || || |||||||| Sbjct 350638 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 350584 Score = 125 bits (138), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || |||||||| ||||| || || || || || || || || || |||||| Sbjct 351533 AGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCT 351474 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || ||||| ||||| |||||||||||||| || || || || || || ||| Sbjct 351473 TCCAACTGCTTACCAGCGAAGATAAGACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCC 351414 Query 140646 TGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 ||||| || ||| || || || || || | ||| | |||||| ||||| || | || Sbjct 351413 TGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGATTCAACCTCAAGGGTGATGGT 351355 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || || || || || || |||||||| Sbjct 351354 CTTTCCAGTAAGAGTCTTCACGAAGATCTGCAT 351322 >seq1 Length=6144005 Score = 152 bits (168), Expect = 2e-31 Identities = 441/672 (66%), Gaps = 9/672 (1%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 3801252 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 3801193 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || |||| ||| || || | || || Sbjct 3801192 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACCCTCAGAACACT 3801133 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTG 349439 || || || || |||||| | || ||| | | || | || | | | || | | Sbjct 3801132 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGGTTCAGG--CCG 3801075 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499 || | || ||||| || || | | || | | ||| |||| || || || || |||| Sbjct 3801074 ATATGAAGCATTTCCCCTTCAAGATCGT-CGACAAG--GGTGGCAAGCCCATCATCGAGG 3801018 Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 | || | || || || || || || || || || || || || | ||| | | Sbjct 3801017 TCGAGTTCAAGGGCGAGACCAAGACC-TTCAGCCCTGAGGAGATCTCTGCTATGATCCTC 3800959 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || ||| || | ||||| | || | || || || || | | |||||| | Sbjct 3800958 ACCAAGATGCGCGAGACCGCTGAGTCTTACCTTGGCGAGACTGTCAACAACGCTGTTGTG 3800899 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || | |||||| || || || |||||||| ||| Sbjct 3800898 ACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAAGCCACCAAGGATGCTGGTCTCATC 3800839 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || ||||| |||| || || || || |||||||| || ||||| || || Sbjct 3800838 GCCGGTCTTAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCTGCCATTGCCTACGGT 3800779 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | ||| || || | || || || ||| | ||||||||||| Sbjct 3800778 CTTGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTCGATCTTGGTGGTGGTACC 3800719 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | || || ||| Sbjct 3800718 TTCGATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGT 3800659 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || ||||| || || || ||||| || Sbjct 3800658 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTTAACGAG 3800599 Query 349919 TTTAAGCGTCAA 349930 || |||||| || Sbjct 3800598 TTCAAGCGTAAA 3800587 Score = 116 bits (128), Expect = 1e-20 Identities = 192/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| ||||||||| |||| ||| || ||||| Sbjct 3937963 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACTGC 3938022 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| ||||| | ||||| || Sbjct 3938023 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTCGCTGGGAGTGAG 3938082 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || |||| | || || | || | || || | ||| | || || Sbjct 3938083 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 3938142 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 | ||||||||||| |||| || || ||| | ||||| || || || || ||| | || Sbjct 3938143 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 3938202 Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 |||| |||| |||| |||||||| |||||| Sbjct 3938203 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 3938235 Score = 98.7 bits (108), Expect = 3e-15 Identities = 102/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||||||||| | ||||| ||| || || | ||||| || || ||||| || || Sbjct 3937202 CGTGGCACACCGAGGGTAACGTTC---TTGGACGACACACCGGCGAAATGGAAGGTGTTC 3937258 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| ||||||||||| |||||||| || | ||| ||||||||||| Sbjct 3937259 AGTGTCATCTGGGTAGCTGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 3937318 Query 377578 CCAGGATTGACAA 377590 ||||| ||||||| Sbjct 3937319 CCAGGGTTGACAA 3937331 >seq7 Length=1585612 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 344091 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 344032 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 344031 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGG 343972 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 343971 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 343912 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 343911 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 343861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251429627859