Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 221 1e-52 seq2 107 2e-18 >seq5 Length=2590615 Score = 221 bits (244), Expect = 1e-52 Identities = 522/778 (67%), Gaps = 28/778 (4%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | |||||| ||||| || | ||| ||| Sbjct 1619446 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 1619387 Query 53240 CGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296 ||||| ||| | | ||| ||| |||| ||| ||||| || | || || || Sbjct 1619386 TTGGAGACATACAATCTGATGTCTAGC---AAGTTCTTCACGCATGCTTCCCCCACGCTC 1619330 Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356 ||||| || || || ||| || || |||| |||||| |||| | |||||||| Sbjct 1619329 TTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 1619270 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 ||| || || || |||||||| || |||||| |||||| ||||||||| | | Sbjct 1619269 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1619210 Query 53417 GGTGGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 |||||||| ||| | | ||| | | | | ||||| | ||| || ||| || | Sbjct 1619209 GGTGGTATTGGTCTAAATGTGCACCGTA--TTCGTGCTACTGGCTCATACATCGCCGGTA 1619152 Query 53475 CGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 | ||||| | ||| |||| | || |||||||| || |||||||||||||| || || Sbjct 1619151 CCAACGGTACATCGA--ATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCG 1619094 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592 ||| ||| |||||||||| ||||| || | || ||||||||||||||||| || Sbjct 1619093 GTATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTG 1619034 Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 |||| | || | | || || || || || ||| ||| || ||| | || ||| | || Sbjct 1619033 GCACTCTGATGTCTTCGATTTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCG 1618974 Query 53653 CTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 |||||| || || || || ||||| || || || |||||| | || || || Sbjct 1618973 TGCCCGTGATCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAA 1618914 Query 53713 GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACG 53771 | ||| || ||| |||||||| || ||||||||||| |||||| | | || ||||| Sbjct 1618913 GAACGGTGACTGGACACTGATGTGTCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACG 1618855 Query 53772 GTGAGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGA 53825 | |||||||| | | |||| | |||| | || | |||| ||| | Sbjct 1618854 GAGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------A 1618801 Query 53826 AGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAA 53885 ||| ||||||| | || | ||| | || || ||| || |||| ||||| |||| Sbjct 1618800 AGACAATCAAGGCTCAGAAGCTTTGGTACGCCATTCTCGAGGCCCAGACTGAGACCGGAA 1618741 Query 53886 CGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || | |||| |||||||||| | ||| ||||||||||| |||||| |||| Sbjct 1618740 ACCCATTCATGCTCTACAAGGATGCCTGTAACCGCAAGAGCAACCAAAAGAACCTCGG 1618683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||||||||| ||||| | ||| || ||||||||||| ||||||||| |||| || | || Sbjct 1617857 TGCTGATCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGACCC 1617798 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | ||| |||| | | | ||||||||| || ||||| || |||||||| || Sbjct 1617797 CACGATGGGCAAGATCACCAGCATGCACTTTGCAGGCTGGAAACTTGGCCTCAAGACCGG 1617738 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 1617737 CATGTACTACCTTCGTAC 1617720 >seq2 Length=4950538 Score = 107 bits (118), Expect = 2e-18 Identities = 270/405 (67%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| ||||| || |||||||||||||||| ||| || | || || ||||| | | Sbjct 3139888 CCTGTACCAATGCCATCGGCACCGTTGACCAGAACCATGGGGAGGATTGGAGCGTATACC 3139829 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG-TCAGCC-- 151992 ||||| | | | ||||| || || | | | || | || | | ||| || Sbjct 3139828 ATTGGCTCGATTTTCTTGCCGTCTTC-ATAATGA--TGCATCA-GGTTTGGCTCATCCAT 3139773 Query 151993 -GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGC 152051 || | ||| ||| || | | ||| || ||| |||||| |||| || | ||||| Sbjct 3139772 GGGGTGGAAGATCTTGCGGGCGAATGGAGACAGACGAGTGAAGGTGTAACGAGGACTGGC 3139713 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 ||||| ||||| || || || | || || | |||| ||| || || ||||| Sbjct 3139712 AGCATCAGATCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGTTCCAGACAGTTGAT 3139653 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 |||||| | ||| ||||| ||||| |||| | ||| || || ||| | ||| Sbjct 3139652 GTTGTTTGAGCCGACGAAGTTCTGGGCCAGGCCGATAATAGTCTGTTGAAGAGACTGTTC 3139593 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||| || || |||||||| | || || || ||||| | | |||||| |||| Sbjct 3139592 ACCGTGGTGGTAGGCAGTCTGCTCAGAGACATAACCAGCCAATTCAACGACCTTCTTGTC 3139533 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 | | || |||||| |||||| || || ||||| ||||| Sbjct 3139532 TTTGACGATATTTCTCTTGAAACAGGCATATATGACCTTACGCTG 3139488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214953449400