Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq5 221 1e-52
seq2 107 2e-18
>seq5
Length=2590615
Score = 221 bits (244), Expect = 1e-52
Identities = 522/778 (67%), Gaps = 28/778 (4%)
Strand=Plus/Minus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| || | | |||||| ||||| || | ||| |||
Sbjct 1619446 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 1619387
Query 53240 CGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296
||||| ||| | | ||| ||| |||| ||| ||||| || | || || ||
Sbjct 1619386 TTGGAGACATACAATCTGATGTCTAGC---AAGTTCTTCACGCATGCTTCCCCCACGCTC 1619330
Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356
||||| || || || ||| || || |||| |||||| |||| | ||||||||
Sbjct 1619329 TTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 1619270
Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416
||| || || || |||||||| || |||||| |||||| ||||||||| | |
Sbjct 1619269 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1619210
Query 53417 GGTGGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474
|||||||| ||| | | ||| | | | | ||||| | ||| || ||| || |
Sbjct 1619209 GGTGGTATTGGTCTAAATGTGCACCGTA--TTCGTGCTACTGGCTCATACATCGCCGGTA 1619152
Query 53475 CGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532
| ||||| | ||| |||| | || |||||||| || |||||||||||||| || ||
Sbjct 1619151 CCAACGGTACATCGA--ATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCG 1619094
Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592
||| ||| |||||||||| ||||| || | || ||||||||||||||||| ||
Sbjct 1619093 GTATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTG 1619034
Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652
|||| | || | | || || || || || ||| ||| || ||| | || ||| | ||
Sbjct 1619033 GCACTCTGATGTCTTCGATTTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCG 1618974
Query 53653 CTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712
|||||| || || || || ||||| || || || |||||| | || || ||
Sbjct 1618973 TGCCCGTGATCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAA 1618914
Query 53713 GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACG 53771
| ||| || ||| |||||||| || ||||||||||| |||||| | | || |||||
Sbjct 1618913 GAACGGTGACTGGACACTGATGTGTCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACG 1618855
Query 53772 GTGAGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGA 53825
| |||||||| | | |||| | |||| | || | |||| ||| |
Sbjct 1618854 GAGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------A 1618801
Query 53826 AGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAA 53885
||| ||||||| | || | ||| | || || ||| || |||| ||||| ||||
Sbjct 1618800 AGACAATCAAGGCTCAGAAGCTTTGGTACGCCATTCTCGAGGCCCAGACTGAGACCGGAA 1618741
Query 53886 CGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
|| | |||| |||||||||| | ||| ||||||||||| |||||| ||||
Sbjct 1618740 ACCCATTCATGCTCTACAAGGATGCCTGTAACCGCAAGAGCAACCAAAAGAACCTCGG 1618683
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
||||||||| ||||| | ||| || ||||||||||| ||||||||| |||| || | ||
Sbjct 1617857 TGCTGATCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGACCC 1617798
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| ||| |||| | | | ||||||||| || ||||| || |||||||| ||
Sbjct 1617797 CACGATGGGCAAGATCACCAGCATGCACTTTGCAGGCTGGAAACTTGGCCTCAAGACCGG 1617738
Query 55906 TATGTACTATCTGCGGAC 55923
|||||||| || || ||
Sbjct 1617737 CATGTACTACCTTCGTAC 1617720
>seq2
Length=4950538
Score = 107 bits (118), Expect = 2e-18
Identities = 270/405 (67%), Gaps = 8/405 (2%)
Strand=Plus/Minus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| ||||| ||||| || |||||||||||||||| ||| || | || || ||||| | |
Sbjct 3139888 CCTGTACCAATGCCATCGGCACCGTTGACCAGAACCATGGGGAGGATTGGAGCGTATACC 3139829
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG-TCAGCC-- 151992
||||| | | | ||||| || || | | | || | || | | ||| ||
Sbjct 3139828 ATTGGCTCGATTTTCTTGCCGTCTTC-ATAATGA--TGCATCA-GGTTTGGCTCATCCAT 3139773
Query 151993 -GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGC 152051
|| | ||| ||| || | | ||| || ||| |||||| |||| || | |||||
Sbjct 3139772 GGGGTGGAAGATCTTGCGGGCGAATGGAGACAGACGAGTGAAGGTGTAACGAGGACTGGC 3139713
Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111
||||| ||||| || || || | || || | |||| ||| || || |||||
Sbjct 3139712 AGCATCAGATCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGTTCCAGACAGTTGAT 3139653
Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171
|||||| | ||| ||||| ||||| |||| | ||| || || ||| | |||
Sbjct 3139652 GTTGTTTGAGCCGACGAAGTTCTGGGCCAGGCCGATAATAGTCTGTTGAAGAGACTGTTC 3139593
Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231
||||||||| || || |||||||| | || || || ||||| | | |||||| ||||
Sbjct 3139592 ACCGTGGTGGTAGGCAGTCTGCTCAGAGACATAACCAGCCAATTCAACGACCTTCTTGTC 3139533
Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276
| | || |||||| |||||| || || ||||| |||||
Sbjct 3139532 TTTGACGATATTTCTCTTGAAACAGGCATATATGACCTTACGCTG 3139488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547214953449400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |