Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq5 302 5e-77
seq15 185 1e-41
seq7 156 5e-33
seq46 120 3e-22
>seq5
Length=2590615
Score = 302 bits (334), Expect = 5e-77
Identities = 1144/1761 (65%), Gaps = 57/1761 (3%)
Strand=Plus/Plus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| ||||||||||| |||||||| | ||||
Sbjct 1617714 GCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGCCAAGTTTCCAGCCTGCAAAGTGC 1617773
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| ||| ||| | | ||||||| || |||| ||||||||| ||||| ||||||
Sbjct 1617774 ATGCTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGA 1617833
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210
||||| || || ||||| || ||||| | || | || | | | | || |||||
Sbjct 1617834 TCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCGCT-GAGAGATCTCCCA 1617892
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || |||| |||| || | || | || |||| || | | | | ||
Sbjct 1617893 GACAGTCTTGTACAGAGCCTT--GACG-TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 1617949
Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||| | || |||| | || |||| || | ||| | ||| | | | ||
Sbjct 1617950 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 1618009
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
|| || | || | | ||| || | || |||| || ||||| || || |
Sbjct 1618010 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGAACACGGCGTTG 1618066
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | || | ||||| ||||| || ||||||||| || || ||||| | || ||
Sbjct 1618067 GTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAGGTACT 1618126
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| || | | | ||| || || | |||||| |||||| |||||
Sbjct 1618127 GGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 1618186
Query 80502 GCGCAAA-TCTGACCAAAAATCA-ACCCCA-ACGCTGTGACC--CCACATGTCGTGCTGC 80556
|| | | ||| || | || | || | | | |||| ||||||||| |||
Sbjct 1618187 TCGAAGAGTCT--CCCAGTCCCAGAGGTCAGAGGGTTTGACGTTCCACATGTCAAACTGG 1618244
Query 80557 AAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCC 80616
| ||| ||||| || || || || ||| ||| || ||| || |||||| ||| |||
Sbjct 1618245 AGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCC 1618304
Query 80617 AGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCAC 80675
|||| |||| || | ||||| |||||||||||| ||| |||| |||||| |
Sbjct 1618305 AGCTG-CACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTGTTGAG 1618363
Query 80676 ACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCC 80735
| || |||| || ||||| | || | || | ||| | || || |||||
Sbjct 1618364 CTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCGGCGAGGCC 1618423
Query 80736 CTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTG 80794
|||||| || | | || || ||||||||| |||| | | || | ||||| | | |
Sbjct 1618424 CTGAACACCCAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGACAG 1618482
Query 80795 GGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCAT 80854
|||| ||| |||||||| ||||| |||||| |||||||| | | || | |
Sbjct 1618483 GGTAGTGGTTCACATCGATGATCTTGTTCAAGTTGCGAATAACAACCTGACTGACCTTGT 1618542
Query 80855 GAAGTTTCTGAAAGTCGAATT--GGTTCCCCTTCACAAATGCCGGAAGGCT----CAGGG 80908
| | |||| |||||| | | ||| | | ||| ||| ||| ||| |
Sbjct 1618543 GCAACTTCTTGAAGTCGTAGCAAGCTTCATCGTAGTTGATGAAGGAGGGCAGAGACAGAG 1618602
Query 80909 ACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACA 80968
| || || ||||| || || ||||| |||| | | |||||| ||||| ||||| |
Sbjct 1618603 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCAAA 1618662
Query 80969 AATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026
|| || ||| || ||||| ||||| || ||||| |||| ||| || || ||
Sbjct 1618663 GGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 1618720
Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086
||||||| |||| | ||| | |||||||| ||| | || ||| ||||||| |||||
Sbjct 1618721 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAG 1618780
Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146
|| | ||||||| |||||| ||||| || | | ||||| |||| |
Sbjct 1618781 CTTCTGAGCCTTGATTGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 1618840
Query 81147 GTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205
||||||| | |||| | ||| | | |||| | ||||||||||| || ||||||||
Sbjct 1618841 CTCGAACTCCTCTCCGTAGCAGT-CGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTG 1618899
Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265
|||||| || || || ||| |||||||||| ||||||||||| |||||| ||
Sbjct 1618900 TCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGA 1618959
Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325
| || || ||| || ||||||| | ||| ||||| || | || || || || |
Sbjct 1618960 AAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGA 1619019
Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGGC 81379
|| || | ||||| ||||| || || | ||| | | || | |||| ||
Sbjct 1619020 AGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG---TTGC 1619076
Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439
||||||||| ||| || || ||||| ||| || ||||| | |||||| | | |||||
Sbjct 1619077 CACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCAT 1619136
Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTGA 81497
|| |||||| ||||| |||| || || | || || || ||| |||
Sbjct 1619137 TCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT-- 1619194
Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557
||||| || ||||| | | ||| || ||| ||||| || | || || || ||
Sbjct 1619195 TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGAT 1619254
Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCT-TT 81616
|||||| || || || | ||||| |||| |||||| || ||||| || |||||
Sbjct 1619255 TCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTG-GGGCTGAG 1619313
Query 81617 TTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGT 81676
| |||||||||||| || || |||| || || |||| | | | |||||||| |
Sbjct 1619314 GGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGAT 1619373
Query 81677 CATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736
|| || ||| ||| || ||||| ||||| ||||| | || |||||||| |
Sbjct 1619374 TGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACACACGCATGA 1619433
Query 81737 ACATGTACTG-GGGCGTCTCG 81756
||||| ||| ||||| ||||
Sbjct 1619434 TCATGTGCTGAGGGCG-CTCG 1619453
>seq15
Length=769536
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| ||||| || ||||| |||||||| || || ||||||
Sbjct 351094 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 351153
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| ||||| || || |||||||||||||| |||||||| || ||
Sbjct 351154 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAA 351213
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| |||||||| ||||||| || || || | ||||| ||
Sbjct 351214 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 351273
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| |||||||| ||||| || | || | |||||||| |||||
Sbjct 351274 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 351320
Score = 181 bits (200), Expect = 1e-40
Identities = 169/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || || |||||||||||||| |||| ||| |
Sbjct 350878 GTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACCATCGAC 350937
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || ||||||||||||||||| || ||||| ||||| ||||| || ||
Sbjct 350938 AATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAACAGCGCCTGATC 350997
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| |||||||| || || | || ||||| || ||||| || | |||||||||
Sbjct 350998 TTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAAAAGGAA 351057
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||| ||||| ||| | || || || |||||
Sbjct 351058 TCCACTCTCCATCTCGTCCTCCGCCTCCGTGGTGG 351092
Score = 158 bits (174), Expect = 1e-33
Identities = 175/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| ||||| || ||||| || || ||||||||||| || ||
Sbjct 351322 ATGCAGATCTTCGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTTGAATCCAGT 351381
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||| || ||||||||||||||||| || || || || |||
Sbjct 351382 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAG 351441
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|| ||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| ||
Sbjct 351442 CAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 351500
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || |||||||| || || | || |||||||| || ||
Sbjct 351501 CATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGGCCA 351551
Score = 145 bits (160), Expect = 9e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| | ||||||||||| || || || |||||||||||
Sbjct 350581 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 350640
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | |||| || | ||| | || ||||||||||||||||| || || || |||
Sbjct 350641 TCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGAC 350700
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||| || | ||||| || || ||||| || ||||| | || || || | || ||
Sbjct 350701 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 350760
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| | || ||||| |||||||||||||| || | || || || |||||
Sbjct 350761 AACATTCAGAAGGAGTCCACTCTTCATCTTGTTCTCCGCCTCCGTGGTGG 350810
>seq7
Length=1585612
Score = 156 bits (172), Expect = 5e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 343861 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 343920
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| || || || ||||||
Sbjct 343921 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 343980
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| ||
Sbjct 343981 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 344039
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || ||| | || || || |||||
Sbjct 344040 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 344087
Score = 127 bits (140), Expect = 2e-24
Identities = 152/206 (74%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719
|| |||||||| ||||||||||| ||||| | || | || || |||| ||||||
Sbjct 1400941 AAGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 1401000
Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779
|||| || ||||| ||| || || || ||||| ||| | ||| ||||| |||
Sbjct 1401001 CTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTC 1401060
Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839
||||| || ||||| || || ||||| |||||| | || || |||||||| ||||||||
Sbjct 1401061 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGT 1401120
Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865
|||||||| || ||| || |||||
Sbjct 1401121 GACGAGGGTCTTCACACTGACTTTGC 1401146
>seq46
Length=180214
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || |||||||| || || || ||||| ||||| || | |||
Sbjct 93232 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 93291
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| ||
Sbjct 93292 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAACAGCGACTG 93351
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||||||||| || ||||||| || || || | ||||| || |||| |||
Sbjct 93352 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 93411
Query 27595 G 27595
|
Sbjct 93412 G 93412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309309281360
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