Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 302 5e-77 seq15 185 1e-41 seq7 156 5e-33 seq46 120 3e-22 >seq5 Length=2590615 Score = 302 bits (334), Expect = 5e-77 Identities = 1144/1761 (65%), Gaps = 57/1761 (3%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| ||||||||||| |||||||| | |||| Sbjct 1617714 GCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGCCAAGTTTCCAGCCTGCAAAGTGC 1617773 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | ||||||| || |||| ||||||||| ||||| |||||| Sbjct 1617774 ATGCTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGA 1617833 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210 ||||| || || ||||| || ||||| | || | || | | | | || ||||| Sbjct 1617834 TCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCGCT-GAGAGATCTCCCA 1617892 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| || | || | || |||| || | | | | || Sbjct 1617893 GACAGTCTTGTACAGAGCCTT--GACG-TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 1617949 Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||| | || |||| | || |||| || | ||| | ||| | | | || Sbjct 1617950 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 1618009 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 || || | || | | ||| || | || |||| || ||||| || || | Sbjct 1618010 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGAACACGGCGTTG 1618066 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | || | ||||| ||||| || ||||||||| || || ||||| | || || Sbjct 1618067 GTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAGGTACT 1618126 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || | | | ||| || || | |||||| |||||| ||||| Sbjct 1618127 GGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 1618186 Query 80502 GCGCAAA-TCTGACCAAAAATCA-ACCCCA-ACGCTGTGACC--CCACATGTCGTGCTGC 80556 || | | ||| || | || | || | | | |||| ||||||||| ||| Sbjct 1618187 TCGAAGAGTCT--CCCAGTCCCAGAGGTCAGAGGGTTTGACGTTCCACATGTCAAACTGG 1618244 Query 80557 AAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCC 80616 | ||| ||||| || || || || ||| ||| || ||| || |||||| ||| ||| Sbjct 1618245 AGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCC 1618304 Query 80617 AGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCAC 80675 |||| |||| || | ||||| |||||||||||| ||| |||| |||||| | Sbjct 1618305 AGCTG-CACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTGTTGAG 1618363 Query 80676 ACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCC 80735 | || |||| || ||||| | || | || | ||| | || || ||||| Sbjct 1618364 CTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCGGCGAGGCC 1618423 Query 80736 CTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTG 80794 |||||| || | | || || ||||||||| |||| | | || | ||||| | | | Sbjct 1618424 CTGAACACCCAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGACAG 1618482 Query 80795 GGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCAT 80854 |||| ||| |||||||| ||||| |||||| |||||||| | | || | | Sbjct 1618483 GGTAGTGGTTCACATCGATGATCTTGTTCAAGTTGCGAATAACAACCTGACTGACCTTGT 1618542 Query 80855 GAAGTTTCTGAAAGTCGAATT--GGTTCCCCTTCACAAATGCCGGAAGGCT----CAGGG 80908 | | |||| |||||| | | ||| | | ||| ||| ||| ||| | Sbjct 1618543 GCAACTTCTTGAAGTCGTAGCAAGCTTCATCGTAGTTGATGAAGGAGGGCAGAGACAGAG 1618602 Query 80909 ACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACA 80968 | || || ||||| || || ||||| |||| | | |||||| ||||| ||||| | Sbjct 1618603 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCAAA 1618662 Query 80969 AATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 || || ||| || ||||| ||||| || ||||| |||| ||| || || || Sbjct 1618663 GGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 1618720 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 ||||||| |||| | ||| | |||||||| ||| | || ||| ||||||| ||||| Sbjct 1618721 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAG 1618780 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146 || | ||||||| |||||| ||||| || | | ||||| |||| | Sbjct 1618781 CTTCTGAGCCTTGATTGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 1618840 Query 81147 GTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 ||||||| | |||| | ||| | | |||| | ||||||||||| || |||||||| Sbjct 1618841 CTCGAACTCCTCTCCGTAGCAGT-CGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTG 1618899 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 |||||| || || || ||| |||||||||| ||||||||||| |||||| || Sbjct 1618900 TCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGA 1618959 Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325 | || || ||| || ||||||| | ||| ||||| || | || || || || | Sbjct 1618960 AAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGA 1619019 Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGGC 81379 || || | ||||| ||||| || || | ||| | | || | |||| || Sbjct 1619020 AGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG---TTGC 1619076 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 ||||||||| ||| || || ||||| ||| || ||||| | |||||| | | ||||| Sbjct 1619077 CACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCAT 1619136 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTGA 81497 || |||||| ||||| |||| || || | || || || ||| ||| Sbjct 1619137 TCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT-- 1619194 Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 ||||| || ||||| | | ||| || ||| ||||| || | || || || || Sbjct 1619195 TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGAT 1619254 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCT-TT 81616 |||||| || || || | ||||| |||| |||||| || ||||| || ||||| Sbjct 1619255 TCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTG-GGGCTGAG 1619313 Query 81617 TTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGT 81676 | |||||||||||| || || |||| || || |||| | | | |||||||| | Sbjct 1619314 GGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGAT 1619373 Query 81677 CATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736 || || ||| ||| || ||||| ||||| ||||| | || |||||||| | Sbjct 1619374 TGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACACACGCATGA 1619433 Query 81737 ACATGTACTG-GGGCGTCTCG 81756 ||||| ||| ||||| |||| Sbjct 1619434 TCATGTGCTGAGGGCG-CTCG 1619453 >seq15 Length=769536 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| ||||| || ||||| |||||||| || || |||||| Sbjct 351094 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 351153 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||| || || |||||||||||||| |||||||| || || Sbjct 351154 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAA 351213 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| |||||||| ||||||| || || || | ||||| || Sbjct 351214 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 351273 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| || | || | |||||||| ||||| Sbjct 351274 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 351320 Score = 181 bits (200), Expect = 1e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || || |||||||||||||| |||| ||| | Sbjct 350878 GTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACCATCGAC 350937 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||||||||||||||| || ||||| ||||| ||||| || || Sbjct 350938 AATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAACAGCGCCTGATC 350997 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| |||||||| || || | || ||||| || ||||| || | ||||||||| Sbjct 350998 TTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAAAAGGAA 351057 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| ||||| ||| | || || || ||||| Sbjct 351058 TCCACTCTCCATCTCGTCCTCCGCCTCCGTGGTGG 351092 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| || ||||| || || ||||||||||| || || Sbjct 351322 ATGCAGATCTTCGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTTGAATCCAGT 351381 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || ||||||||||||||||| || || || || ||| Sbjct 351382 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAG 351441 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| || Sbjct 351442 CAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 351500 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || |||||||| || || | || |||||||| || || Sbjct 351501 CATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGGCCA 351551 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 350581 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 350640 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | |||| || | ||| | || ||||||||||||||||| || || || ||| Sbjct 350641 TCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGAC 350700 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || | ||||| || || ||||| || ||||| | || || || | || || Sbjct 350701 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 350760 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| |||||||||||||| || | || || || ||||| Sbjct 350761 AACATTCAGAAGGAGTCCACTCTTCATCTTGTTCTCCGCCTCCGTGGTGG 350810 >seq7 Length=1585612 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 343861 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 343920 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 343921 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 343980 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| || Sbjct 343981 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 344039 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 344040 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 344087 Score = 127 bits (140), Expect = 2e-24 Identities = 152/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || |||||||| ||||||||||| ||||| | || | || || |||| |||||| Sbjct 1400941 AAGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 1401000 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || ||||| ||| || || || ||||| ||| | ||| ||||| ||| Sbjct 1401001 CTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTC 1401060 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| |||||| | || || |||||||| |||||||| Sbjct 1401061 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGT 1401120 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 |||||||| || ||| || ||||| Sbjct 1401121 GACGAGGGTCTTCACACTGACTTTGC 1401146 >seq46 Length=180214 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 93232 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 93291 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 93292 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAACAGCGACTG 93351 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| || ||||||| || || || | ||||| || |||| ||| Sbjct 93352 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 93411 Query 27595 G 27595 | Sbjct 93412 G 93412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309309281360