Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq5 208 1e-48
seq7 136 6e-27
>seq5
Length=2590615
Score = 208 bits (230), Expect = 1e-48
Identities = 564/852 (66%), Gaps = 16/852 (2%)
Strand=Plus/Plus
Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAA 76413
||| || || || || | |||||||||||| |||||| | ||||| || || | ||
Sbjct 1618676 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAA 1618735
Query 76414 CGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTA 76472
|| |||| || ||| |||| | |||| ||| | | ||| | | ||| ||| || |
Sbjct 1618736 TGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAA-GCTTCTGAGCCTTGA 1618794
Query 76473 TTATAGATTTGTATCGCTT---CTCTCTTTCATATTGT--GTATATAACCGTTCAAATTC 76527
|| | ||| | ||| ||| | || || | | ||| | | || || || ||
Sbjct 1618795 TTGTC---TTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACTC 1618849
Query 76528 ATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACC 76587
||||| | || | | ||||| || || || |||||||||| || ||| |||||
Sbjct 1618850 CTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACC 1618909
Query 76588 ATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647
| | | ||| || ||||| || |||||||| ||||| || || | || ||||| ||
Sbjct 1618910 GTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGATCACG 1618969
Query 76648 GGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGA 76707
|| | || || || || ||||| ||||| ||||| || | | ||||||
Sbjct 1618970 GGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGA 1619029
Query 76708 ATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTAT 76767
||||| || || || || || || | | |||| ||||| || || || ||||| || |
Sbjct 1619030 GTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGAC 1619089
Query 76768 ATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATT 76827
||| | |||||||| || | || | | ||| |||| || || || |||||||| ||
Sbjct 1619090 ATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTT 1619149
Query 76828 TGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCC 76887
|| || | || || ||| ||||||||| | | ||| || || || ||
Sbjct 1619150 GGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACC 1619209
Query 76888 TGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATC 76947
||||| || ||||| | |||||| || | || || ||||| ||||| ||||| ||
Sbjct 1619210 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 1619269
Query 76948 ATCCATCATGTTAAG-AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 77006
||| |||| | || ||||| || | |||| ||| | ||| || || ||||| |
Sbjct 1619270 GTCCTTCATATCAACCAAGAAGCAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCATTGA 1619328
Query 77007 ACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAA 77066
| | || || || ||||| ||||| | || ||| | ||||||||||| || | |
Sbjct 1619329 AGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAAGA 1619388
Query 77067 CTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGT 77125
|| || ||||| || | || || |||| |||||||| | ||| ||||||||
Sbjct 1619389 CTCGCTCGATATCATCACCCCAG-ATACCAACAGACACACGCATGATCATGTGCTGAGGG 1619447
Query 77126 CGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCA 77185
|| || ||| ||||| | || || | | ||||||| |||||||| || || |||
Sbjct 1619448 CGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCA 1619507
Query 77186 AAATAGTTGTAT 77197
|| || | ||||
Sbjct 1619508 AAGTATTGGTAT 1619519
>seq7
Length=1585612
Score = 136 bits (150), Expect = 6e-27
Identities = 547/854 (64%), Gaps = 18/854 (2%)
Strand=Plus/Minus
Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398
|| ||||| || | ||||| |||||||| || || || ||||| | | || || ||
Sbjct 1401440 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 1401381
Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458
|||||||| || || || || || | || || | || | || | | ||
Sbjct 1401380 TCCATAAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGG 1401321
Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518
|| | ||| || ||||| || || ||| ||||| | ||| | ||||| || | |||
Sbjct 1401320 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG 1401261
Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATAT--TA 46576
|| ||||| || || || ||||| || ||||| ||||| ||||| | || ||
Sbjct 1401260 GCACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 1401201
Query 46577 TC---GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633
|| ||| | ||| || ||| | || | | | || | | ||||
Sbjct 1401200 TCCTGGATCAT-CTGCTT----ACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGGCATG 1401146
Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693
|||| ||| ||||| || || || | | || | ||||| || || || || ||||
Sbjct 1401145 CAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAG 1401086
Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753
|||| || |||||||| |||||||| || |||| ||||| | ||| ||||| || |
Sbjct 1401085 GCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATAC 1401026
Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCC 46810
| || ||||| || || || || || | || | | || || |||| | ||||
Sbjct 1401025 CCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCC 1400966
Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870
| | ||||| |||||||| || | || || || || || || || || ||||
Sbjct 1400965 ATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGA 1400906
Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930
|| || || | | || || | ||||| || || | || || | || |
Sbjct 1400905 GATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATAAGGAGGGAGTAGGTCTCGG 1400846
Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990
|||||||||| || || ||||| || ||||| || || | || |||| ||||| |
Sbjct 1400845 AATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGA 1400786
Query 46991 CCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAA 47049
|||| || ||||| || ||| | ||||| || || || |||||| ||||| ||
Sbjct 1400785 CCTCACCACTGAATCGCTC-GACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAG 1400727
Query 47050 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCA 47106
|| || | | || | ||| | | ||||| | ||| | | || ||||||||
Sbjct 1400726 AAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCG 1400667
Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166
| || ||| || || | ||| | || ||||| |||||||| || ||||| || || ||
Sbjct 1400666 TGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTG 1400607
Query 47167 TACATATTCCATAT 47180
||||| | ||| ||
Sbjct 1400606 TACATTTGCCAAAT 1400593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712933036512960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |