Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 208 1e-48 seq7 136 6e-27 >seq5 Length=2590615 Score = 208 bits (230), Expect = 1e-48 Identities = 564/852 (66%), Gaps = 16/852 (2%) Strand=Plus/Plus Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAA 76413 ||| || || || || | |||||||||||| |||||| | ||||| || || | || Sbjct 1618676 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAA 1618735 Query 76414 CGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTA 76472 || |||| || ||| |||| | |||| ||| | | ||| | | ||| ||| || | Sbjct 1618736 TGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAA-GCTTCTGAGCCTTGA 1618794 Query 76473 TTATAGATTTGTATCGCTT---CTCTCTTTCATATTGT--GTATATAACCGTTCAAATTC 76527 || | ||| | ||| ||| | || || | | ||| | | || || || || Sbjct 1618795 TTGTC---TTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACTC 1618849 Query 76528 ATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACC 76587 ||||| | || | | ||||| || || || |||||||||| || ||| ||||| Sbjct 1618850 CTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACC 1618909 Query 76588 ATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 | | | ||| || ||||| || |||||||| ||||| || || | || ||||| || Sbjct 1618910 GTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGATCACG 1618969 Query 76648 GGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGA 76707 || | || || || || ||||| ||||| ||||| || | | |||||| Sbjct 1618970 GGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGA 1619029 Query 76708 ATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTAT 76767 ||||| || || || || || || | | |||| ||||| || || || ||||| || | Sbjct 1619030 GTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGAC 1619089 Query 76768 ATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATT 76827 ||| | |||||||| || | || | | ||| |||| || || || |||||||| || Sbjct 1619090 ATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTT 1619149 Query 76828 TGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCC 76887 || || | || || ||| ||||||||| | | ||| || || || || Sbjct 1619150 GGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACC 1619209 Query 76888 TGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATC 76947 ||||| || ||||| | |||||| || | || || ||||| ||||| ||||| || Sbjct 1619210 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 1619269 Query 76948 ATCCATCATGTTAAG-AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 77006 ||| |||| | || ||||| || | |||| ||| | ||| || || ||||| | Sbjct 1619270 GTCCTTCATATCAACCAAGAAGCAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCATTGA 1619328 Query 77007 ACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAA 77066 | | || || || ||||| ||||| | || ||| | ||||||||||| || | | Sbjct 1619329 AGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAAGA 1619388 Query 77067 CTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGT 77125 || || ||||| || | || || |||| |||||||| | ||| |||||||| Sbjct 1619389 CTCGCTCGATATCATCACCCCAG-ATACCAACAGACACACGCATGATCATGTGCTGAGGG 1619447 Query 77126 CGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCA 77185 || || ||| ||||| | || || | | ||||||| |||||||| || || ||| Sbjct 1619448 CGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCA 1619507 Query 77186 AAATAGTTGTAT 77197 || || | |||| Sbjct 1619508 AAGTATTGGTAT 1619519 >seq7 Length=1585612 Score = 136 bits (150), Expect = 6e-27 Identities = 547/854 (64%), Gaps = 18/854 (2%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| || | ||||| |||||||| || || || ||||| | | || || || Sbjct 1401440 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 1401381 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 |||||||| || || || || || | || || | || | || | | || Sbjct 1401380 TCCATAAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGG 1401321 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | ||| || ||||| || || ||| ||||| | ||| | ||||| || | ||| Sbjct 1401320 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG 1401261 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATAT--TA 46576 || ||||| || || || ||||| || ||||| ||||| ||||| | || || Sbjct 1401260 GCACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 1401201 Query 46577 TC---GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633 || ||| | ||| || ||| | || | | | || | | |||| Sbjct 1401200 TCCTGGATCAT-CTGCTT----ACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGGCATG 1401146 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||| ||| ||||| || || || | | || | ||||| || || || || |||| Sbjct 1401145 CAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAG 1401086 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| || |||||||| |||||||| || |||| ||||| | ||| ||||| || | Sbjct 1401085 GCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATAC 1401026 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCC 46810 | || ||||| || || || || || | || | | || || |||| | |||| Sbjct 1401025 CCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCC 1400966 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | | ||||| |||||||| || | || || || || || || || || |||| Sbjct 1400965 ATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGA 1400906 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 || || || | | || || | ||||| || || | || || | || | Sbjct 1400905 GATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATAAGGAGGGAGTAGGTCTCGG 1400846 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 |||||||||| || || ||||| || ||||| || || | || |||| ||||| | Sbjct 1400845 AATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGA 1400786 Query 46991 CCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAA 47049 |||| || ||||| || ||| | ||||| || || || |||||| ||||| || Sbjct 1400785 CCTCACCACTGAATCGCTC-GACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAG 1400727 Query 47050 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCA 47106 || || | | || | ||| | | ||||| | ||| | | || |||||||| Sbjct 1400726 AAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCG 1400667 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 | || ||| || || | ||| | || ||||| |||||||| || ||||| || || || Sbjct 1400666 TGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTG 1400607 Query 47167 TACATATTCCATAT 47180 ||||| | ||| || Sbjct 1400606 TACATTTGCCAAAT 1400593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933036512960