Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq7 129 4e-25
seq15 118 8e-22
seq46 100 2e-16
>seq7
Length=1585612
Score = 129 bits (142), Expect = 4e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| |||||| ||||||||||| ||| || ||| | || ||
Sbjct 344069 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 344010
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||| | |||||||| || | || | || ||||| |||
Sbjct 344009 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 343950
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||||| || |||||||| | || ||||||||
Sbjct 343949 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 343890
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||||||||| ||||| || |||||
Sbjct 343889 CCCGTGAGGGTCTTGACGAAAATCTGCAT 343861
>seq15
Length=769536
Score = 118 bits (130), Expect = 8e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || ||||| ||| |||||| || ||||||||||| | ||| ||| |||| ||
Sbjct 350792 ACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCA 350733
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || ||||| || ||||| || | || | || ||||| |||
Sbjct 350732 AGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGA 350673
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || ||||||| || || ||||| | || || |||||
Sbjct 350672 ATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTG 350613
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|| || | |||||| |||||||| |||||||||
Sbjct 350612 CCGGTCAAGGTCTTGACGAAGATCTGCATGATG 350580
Score = 118 bits (130), Expect = 8e-22
Identities = 155/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186
|||| ||| || || ||||| ||||||||||| |||| ||||| | || | || |
Sbjct 351302 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCG-GC-CATCCT 351245
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
| || ||||| || || ||||| | ||||| ||||| | ||| | ||| ||||| |||
Sbjct 351244 CAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATACCCTCCTTGTCCT 351185
Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||||| | | ||||| |||| || || || |||| ||||| ||||
Sbjct 351184 GGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCT 351125
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || |||||||| ||||||||||||||
Sbjct 351124 TTCCAGTAAGGGTCTTGACGAAGATTTGCAT 351094
Score = 114 bits (126), Expect = 9e-21
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|| |||||||| || |||||| ||||||||||| ||| | || || || | || ||
Sbjct 351530 ACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG-CGACCATCTTC 351472
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || || ||||| | ||| |||||||| | || | || ||||| |||
Sbjct 351471 CAACTGCTTACCAGCGAAGATAAGACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCCTG 351412
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| | | || ||||| |||||| ||||| | || || |||||
Sbjct 351411 AATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGATTCAACCTCAAGGGTGATGGTCTT 351352
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || |||||||||||||| |||||
Sbjct 351351 TCCAGTAAGAGTCTTCACGAAGATCTGCAT 351322
Score = 105 bits (116), Expect = 5e-18
Identities = 145/201 (72%), Gaps = 4/201 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || || || ||| |||||||| |||||||| ||||| || || |||| ||
Sbjct 351074 ACGAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCA 351015
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || |||||||||| ||||| || || | ||| | || ||||| |||
Sbjct 351014 AGTTGCTTTCCAGCAAAGATCAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 350955
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | ||||| |||| || || ||||| | || || ||||
Sbjct 350954 ATCTTCGACTTAACATTGT--CGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCT 350897
Query 44307 TTCCCGTGAGGGTCTTCACGA 44327
| || ||||||||||| ||||
Sbjct 350896 TGCCAGTGAGGGTCTTGACGA 350876
>seq46
Length=180214
Score = 100 bits (110), Expect = 2e-16
Identities = 133/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| || | || || |||||||| || || ||||
Sbjct 93412 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGA 93353
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| ||||| || || | || | || ||||| ||| ||||| ||| || |||
Sbjct 93352 TCAGTCGCTGTTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 93293
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | ||| || ||||| | || || ||||| ||||| |||||||||||
Sbjct 93292 --CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 93235
Query 44326 GAA 44328
|||
Sbjct 93234 GAA 93232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359989728730401
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |