Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 145 9e-30 >seq3 Length=8783590 Score = 145 bits (160), Expect = 9e-30 Identities = 361/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||||||||| | | || | |||||||| || || || || ||||| ||||| Sbjct 2692423 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGGCC 2692482 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 |||||| || ||||| || || || ||||| | || ||||| || || || || || Sbjct 2692483 ACGCTTCTTGAGCCAGAAAATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2692542 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 24324 |||||||||| ||| | || || | || | |||| || ||||| | || | Sbjct 2692543 AGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTCCTTGTCCTGGATCCATCGAATG-G 2692601 Query 24325 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 24384 |||| || ||||||||| | ||||| || || || || || || ||||| || || Sbjct 2692602 CCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAATGGCGTTGAAGAGGTATGTTC 2692661 Query 24385 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 24444 ||| | || || | || || ||||| | || || | || || || |||| Sbjct 2692662 TTTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGTAGGGAGTATGTCTCGGAGTGGATGT 2692721 Query 24445 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATAC 24504 | || || || || || |||||||| |||| |||||||| |||||| || || || Sbjct 2692722 TCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGAATCTGGACCTCGCCAC 2692781 Query 24505 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 24564 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 2692782 TGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCGAGGA 2692841 Query 24565 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 24621 || | || | | || |||| || | | || ||||| || | || ||| | Sbjct 2692842 TGTGGGAGACGAAGAACTGCTCATCTGCAGTCAGACGGTTGTTCCAGTCGTGGAGATCCT 2692901 Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 24681 | || | ||| | || || ||||||| || || ||||||||||| || ||||| | || Sbjct 2692902 TGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGTACATCTGCC 2692961 Query 24682 AGAT 24685 |||| Sbjct 2692962 AGAT 2692965 Score = 118 bits (130), Expect = 1e-21 Identities = 568/892 (64%), Gaps = 16/892 (2%) Strand=Plus/Plus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 53769 || || || || ||||| || ||||||| || | ||| || | || ||||| ||||| Sbjct 3510440 GAGGCAAGGTTGCAAACAGCAACCTCATCAGGGGC-GCAGTACTCAATGATCTCGGTGCA 3510498 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 ||| || | ||||| || | || | ||| || ||||| ||| || ||| Sbjct 3510499 AAGGTTGGAGCTTCGAATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATC 3510558 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || ||||| || | || || || |||||| || | || || | ||| | Sbjct 3510559 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGGATGGCGTACCAAAG 3510618 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTA--TAGTGTATAC 53944 | ||||| || ||| ||| | ||| ||||| ||||| | ||| | Sbjct 3510619 CTTCTGGGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTACAG 3510675 Query 53945 AATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 54004 | | ||||||||||| || | | ||| ||||| || || | || ||||| Sbjct 3510676 AGCC--TCAAACTCGTCACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATG 3510733 Query 54005 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 54064 | | ||| || |||| | || || || |||||||| |||||||| ||||||||||| Sbjct 3510734 AGAGTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCAGGGATCCAAAGAGCC 3510793 Query 54065 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 54124 | || || || | | | || || || || ||||||| ||||| |||||| Sbjct 3510794 AGGAACAGGTCACGAGCGCGGACCTCTTCCTTACCGTGATTCTTTCGGAGATCAAGGAAC 3510853 Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184 | | | ||| | ||||| || || | ||| || | | | ||||| || ||||| Sbjct 3510854 TCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATAGCGAATGCACCAGGTCGCTTGTTA 3510913 Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || ||||| || | || | ||| |||||||| | || | | ||| |||| || ||| Sbjct 3510914 CCACCCTGGTCGACATAACGAGCAGTGTTATTGAAGACACGTAGCATGGGAACAACACCG 3510973 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || || | ||| ||||| |||| ||| || ||| ||||||| || | | | | | Sbjct 3510974 TTAGAAGTACCGTTGGTTCCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGAACGTT 3511032 Query 54305 -AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | || || || || ||||| ||||| || | || || || | ||||| ||||| Sbjct 3511033 CAAGCCAATACCACCAGCCATCTTAGAAATCATGGCACAAGTCTTGAGGGTATCGTAGAT 3511092 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423 || || || || || ||| |||| | || || || || |||| || | || Sbjct 3511093 ACCGTCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGG 3511152 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 || || || || |||| || || ||||| || || || | || || | || || Sbjct 3511153 GGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTGGACATGAGGTT 3511212 Query 54484 GTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| ||||| | | || | ||| || | || || || || |||||||| | Sbjct 3511213 GTATGTCTCCAAGACACGATCGACATCGTCACCCCAG-ATACCAACAGCAACACGCATGA 3511271 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGA 54594 ||| |||||||| | ||| | || ||| || || |||| || ||||| Sbjct 3511272 TCATATGCTGAGGACGCTCAGCAATTTTGCCGTCAATATTCAATAAATAGGA 3511323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720256704880