Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 239 5e-58 seq1 140 3e-28 seq2 105 7e-18 >seq3 Length=8783590 Score = 239 bits (264), Expect = 5e-58 Identities = 501/737 (68%), Gaps = 15/737 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | ||||||| | || || Sbjct 2692965 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCCTTCTGGACAGCCGAGGAGATCGATCTT 2692906 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | || ||| | | |||| ||| || Sbjct 2692905 TCCAAGGATCTCCA-CGACTGGAACAACCGTCTGACTGCAGATGAGCAGTTCTTCGTCTC 2692847 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || || || ||||| ||| || || |||||||||||||| || || ||||| Sbjct 2692846 CCACATCCTCGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCG 2692787 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||| | ||||||| || ||||||||||| || |||||| || Sbjct 2692786 ATTCAGTGGCGAGGTCCAGATTCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 2692727 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || ||||| ||||| ||| | | || || Sbjct 2692726 GGAGAACATCCACTCCGAGACATACTCCCTACTCATTGACACCTACATCAAGGAGC-CTG 2692668 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | |||| | | | | | |||||||| || || || || ||| || | |||||| Sbjct 2692667 CCCAA-AGAACATACCTCT--TCAACGCCATTGACACTATTCCTTGCATCCGAAAGAAGG 2692611 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| | || |||||| | || || || | || | | || || || | Sbjct 2692610 CTGACTGGGCCATTCGATGGATCCAGGACAAGGACTCCTCATTTGCTCAACGTCTTGTTG 2692551 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || ||||| ||||| ||||||| || || ||| | || || ||||||| Sbjct 2692550 CCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATTTTCTGGCTCA 2692491 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || ||||||||||| || ||||| ||| ||||||||||||||| | ||||||| Sbjct 2692490 AGAAGCGTGGCCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGG 2692431 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || ||||||||||| | || | || | | || | ||| | Sbjct 2692430 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTTAAGGGACGTGCCAGCAAGC 2692371 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | || ||| ||| ||||||| || || |||| |||||| ||||| || || | Sbjct 2692370 AGATGATCCAGGACATCATCACCGATGCCGTTACCATTGAGCAGGAGTTCCTTACTGAGG 2692311 Query 117288 CGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | || || |||| ||| ||||| | || | | | ||| ||| ||||||||||| Sbjct 2692310 CTCTCCCTTGTGC-TCTTCTGGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTT 2692252 Query 117347 GTCGCCGACAGGCTGCT 117363 ||||| || | ||||| Sbjct 2692251 GTCGCTGATCGTCTGCT 2692235 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || |||||| | || || || | || Sbjct 6944545 ATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 6944486 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| |||||||| ||| ||||||| Sbjct 6944485 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 6944427 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || ||||| || || | |||||||| | ||||||||| Sbjct 6944426 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 6944367 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 6944366 CATCCAGAAGGAGTCTACTCTTCACCTGGT 6944337 >seq1 Length=11790407 Score = 140 bits (154), Expect = 3e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 6427835 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 6427894 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || ||| | Sbjct 6427895 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGATTG 6427954 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | || |||||| ||||||||||||||||||| Sbjct 6427955 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 6428014 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| | || ||||| || || Sbjct 6428015 GAGTCTACTCTGCACCTTGT 6428034 >seq2 Length=9166667 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | | Sbjct 2678440 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCT 2678381 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | || || || || || || | ||||| Sbjct 2678380 GACACCATCGACAACG-TCAAGTCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCA 2678322 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | || | ||| ||||| ||||| || || | || ||||| ||||||||| Sbjct 2678321 GCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTTCCGACTACAA 2678262 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 2678261 TATCCAGAAGGAGTCGACCCTCCACCTTGT 2678232 Score = 102 bits (112), Expect = 8e-17 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| ||||||||| |||| || || | | |||| | | Sbjct 2678148 TCGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGACACCATCG 2678089 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | || || || || || || | |||||||| |||||| Sbjct 2678088 ACAACG-TCAAGTCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAGCAGCGACTC 2678030 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | || ||||| |||||||||||| |||||| Sbjct 2678029 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTTCCGACTACAACATTCAGAAG 2677970 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| | || || || || || Sbjct 2677969 GAGTCAACCCTCCACCTTGT 2677950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218034316560