Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq1 111 1e-19 seq2 89.7 4e-13 >seq3 Length=8783590 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || |||||||| ||||||| ||||| ||||||| Sbjct 6944337 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 6944396 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || |||||||||||||| Sbjct 6944397 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 6944456 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||| ||||| | ||| | ||| || Sbjct 6944457 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 6944516 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || |||||||||||| Sbjct 6944517 CCCGTAAGGGTCTTGACGAAAATCTGCATG 6944546 Score = 100 bits (110), Expect = 2e-16 Identities = 247/369 (67%), Gaps = 27/369 (7%) Strand=Plus/Minus Query 44942 ATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAAC 45001 ||||| || ||||| || |||||| | || || | ||||| ||||| ||||| || Sbjct 2692476 ATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGAC 2692417 Query 45002 TTTGCCTGCCTCTACTATAATACGAGAGTCGATCAAAAGTTGGACGCGCC--CA--CCG- 45056 |||||||||||| || | | || | | ||| ||||| ||| || | | Sbjct 2692416 TTTGCCTGCCTC--CTCCACTC------TC-ACCTTAAG--GGACGTGCCAGCAAGCAGA 2692368 Query 45057 ---TCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTC 45113 || | ||||| || |||| ||||| |||| ||| ||| || || ||||||||| Sbjct 2692367 TGATCCAGGACATCATCACCGATGCCGTTACCATTGAGCAGGAGTTCCTTACTGAGGCTC 2692308 Query 45114 TGCCCGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCG 45173 | || | | |||| |||||| | || | |||| ||||||| |||||||||| Sbjct 2692307 TCCCTTGTGCTCTTCTGGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTCG 2692248 Query 45174 CCGATCGTCTTCTCG----TCCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCA 45229 | |||||||| |||| || | ||| | ||| ||||| | || ||||| Sbjct 2692247 CTGATCGTCTGCTCGTTGCTCTCGGTAACG----AGAAGGTGTACAAGGCTACAAACCCC 2692192 Query 45230 TTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTC 45289 ||||| || ||| | || || || ||| ||||| || || ||||| ||||| ||||| Sbjct 2692191 TTCGACTTCATGGAGAACATCTCTCTGGGTGGCAAGACCAACTTTTTCGAGAAGCGCGTT 2692132 Query 45290 GGCGAATAC 45298 | ||| ||| Sbjct 2692131 GCCGACTAC 2692123 >seq1 Length=11790407 Score = 111 bits (122), Expect = 1e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| ||| | || || |||||||||||| || ||| Sbjct 6428022 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCA 6427963 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||| || || || || |||||||||||||| || || || Sbjct 6427962 GCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 6427903 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||||| | ||||||||||| ||| | || ||||| ||||| || Sbjct 6427902 ACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTC 6427843 Query 118722 TTTACAAAA 118730 || || ||| Sbjct 6427842 TTCACGAAA 6427834 >seq2 Length=9166667 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || ||||||||||| ||| | || || |||||| ||||| Sbjct 2677955 GTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCAAGCTG 2678014 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| ||||||| |||||||| || ||||| || || ||||| || || || Sbjct 2678015 CTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTT 2678074 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| ||||||| ||| | || ||||| || Sbjct 2678075 GGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGT 2678134 Query 118715 CAGAGTTTTTAC 118726 || || || || Sbjct 2678135 AAGGGTCTTGAC 2678146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829442997252