Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3 105 5e-18 seq1 102 6e-17 >seq3 Length=8783590 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| |||| ||| | || || Sbjct 6944337 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 6944396 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| ||||| || || | |||||||||||| Sbjct 6944397 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 6944456 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| |||||||| Sbjct 6944457 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 6944516 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || ||||| || || || |||||| ||||| Sbjct 6944517 CCCGTAAGGGTCTTGACGAAAATCTGCATGATGCCT 6944552 >seq1 Length=11790407 Score = 102 bits (112), Expect = 6e-17 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAG 45189 |||||| || ||||||||| |||||||||||| || | ||| ||| ||| || Sbjct 6428029 GTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG---AG 6427973 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 || || || ||||| ||||| ||||||||||| || || | |||||||||||| || Sbjct 6427972 CTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGAT 6427913 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || ||| || | | | ||||| ||| ||||| | ||| || |||||||| Sbjct 6427912 CTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCC 6427853 Query 45310 CGTCAGAGTCTTCACAAA 45327 |||||| |||||||| || Sbjct 6427852 CGTCAGGGTCTTCACGAA 6427835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074328488801