Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 237 1e-57 seq2 96.9 3e-15 >seq3 Length=8783590 Score = 237 bits (262), Expect = 1e-57 Identities = 585/885 (66%), Gaps = 2/885 (0%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||||| || || |||||| | || ||||| || Sbjct 3510440 GAGGCAAGGTTGCAAACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCGGTGCAA 3510499 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | |||||||| || || ||||| |||| Sbjct 3510500 AGGTTGGAGCTTCGAATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCC 3510559 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | ||| || ||| | Sbjct 3510560 TTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGGATGGCGTACCAAAGC 3510619 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGC 23265 |||| || | | | | | || ||| || ||| ||||||||| | ||||| || Sbjct 3510620 TTCTGGGCCTTGATA-GACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTACAGAGC 3510678 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 ||||| ||| ||||||| ||||| |||||||| || | | | || ||||||||| | Sbjct 3510679 CTCAAACTCGTCACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGT 3510738 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || || || || || ||||||||||||| || ||||| ||||| ||| Sbjct 3510739 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCAGGGATCCAAAGAGCCAGGAA 3510798 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 ||| || || ||||| ||||| || || ||| |||||| | ||| | || || || Sbjct 3510799 CAGGTCACGAGCGCGGACCTCTTCCTTACCGTGATTCTTTCGGAGATCAAGGAACTCGAA 3510858 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 || || || ||||| ||||| ||||| | || || || || |||| ||| || || || Sbjct 3510859 GACATCGGCGTGCCAAGGCTCAAGGTAGATAGCGAATGCACCAGGTCGCTTGTTACCACC 3510918 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||| ||||| || ||||| ||| | || | |||||| || || | |||||| || Sbjct 3510919 CTGGTCGACATAACGAGCAGTGTTATTGAAGACACGTAGCATGGGAACAACACCGTTAGA 3510978 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| || || | || || | || || | |||||||| || || Sbjct 3510979 AGTACCGTTGGTTCCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGAACGTTCAAGCC 3511038 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || || || || ||||| || || || || || |||||||| || || Sbjct 3511039 AATACCACCAGCCATCTTAGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCGTC 3511098 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 ||||||||||| || | | || | ||| || || |||| || | | || ||| | Sbjct 3511099 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGGGGTACC 3511158 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 || ||| ||||| ||| || || || ||| | | ||||| || ||||| || Sbjct 3511159 AGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTGGACATGAGGTTGTATGT 3511218 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 || | | | ||| | || || || ||||| | || || ||||| ||||| | Sbjct 3511219 CTCCAAGACACGATCGACATCGTCACCCCAGATACCAACAGCAACACGCATGATCATATG 3511278 Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGA 23910 ||||| | ||| | | ||||| ||| || || | ||| || Sbjct 3511279 CTGAGGACGCTCAGCAATTTTGCCGTCAATATTCAATAAATAGGA 3511323 Score = 138 bits (152), Expect = 1e-27 Identities = 557/865 (64%), Gaps = 37/865 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| |||||||| || || || ||||| | ||| || | || || Sbjct 2692965 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCCTTCTGGACAGCCGAGGAGATCGATCTT 2692906 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC-TCAAAGAAT-CTGA-GAGAAATTTTA--TTA 57684 || |||||||| ||| ||| | || || || | | || ||| | || | | Sbjct 2692905 TCCAAGGATCTCCACGACTGGAACAACCGTCT--GACTGCAGATGAGCAGTTCTTCGTCT 2692848 Query 57685 AACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAA 57744 ||| | | || || ||||| || || |||||||| || |||||||| | || || Sbjct 2692847 CCCACATCCTCGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGC 2692788 Query 57745 GATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| || || || | | ||||| ||||||| ||||| || || | | Sbjct 2692787 GATTCAGTGGCGAGGTCCAGATTCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGA 2692728 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || | || || |||||||| || || ||| | ||||| | Sbjct 2692727 TGGAGAACATCCACTCCGAGACATACTCCCTACTCATTGACACCTACATCAAGGAGCCTG 2692668 Query 57865 ACGAGA-AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCA 57923 | | | ||| || || |||||||| || || || || || ||| |||||||| Sbjct 2692667 CCCAAAGAACATAC-CTCTTCAACGCCATTGACACTATTCCTTGCATCCGAAAGAAGGCT 2692609 Query 57924 GAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATC 57980 || ||| | || |||||| | | || || || | || || | | || | Sbjct 2692608 GACTGGGCCATTCGATGGATCCAG---GACAAGGACTCCTCATTTGCTCAACGTCTTGTT 2692552 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || ||||| || ||||| ||||| || |||||| | || || ||| | Sbjct 2692551 GCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATTTTCTGGCTC 2692492 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || ||||| ||||| || ||||| || ||||||| | || || || |||||| Sbjct 2692491 AAGAAGCGTGGCCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAG 2692432 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGG 58160 ||||| || ||||| ||||| ||||| | |||||||| || || |||| | Sbjct 2692431 GGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTT-------AAGGGACGTGC 2692379 Query 58161 GATC--GC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGT 58213 | | || ||| |||||| |||||||| || || | || || | ||||| | Sbjct 2692378 CAGCAAGCAGATGATCCAGGACATCATCACCGATGCCGTTACCATTGAGCAGGAGTTCCT 2692319 Query 58214 CACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACAT 58273 || || || || || || | || || |||||| | | ||| ||||||| Sbjct 2692318 TACTGAGGCTCTCCCTTGTGCTCTTCTGGGCATGAACTCCAACCTCATGAAGCAGTACAT 2692259 Query 58274 TGAGTTTGTTGCCGACAGACT----TTTGCTCGAACTGATTGGAGAGCGTCATTACAACA 58329 |||||||| || || | || |||||| | | |||| || ||||| Sbjct 2692258 CGAGTTTGTCGCTGATCGTCTGCTCGTTGCTC--TCGGTAACGAGAAGGT--GTACAAGG 2692203 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 | | ||| || || || || ||| | ||||| || | |||||||| |||||||||| Sbjct 2692202 CTACAAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGTGGCAAGACCAACTTTTTCG 2692143 Query 58390 aaaaaaaaGTTAGCGAATATCAAAA 58414 | || ||| ||| || ||||| Sbjct 2692142 AGAAGCGCGTTGCCGACTACCAAAA 2692118 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| | || || || | || Sbjct 6944546 CATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 6944487 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 6944486 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 6944427 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || || ||||||| || || Sbjct 6944426 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 6944367 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || |||||||| ||||| || Sbjct 6944366 CATCCAGAAGGAGTCTACTCTTCACCTGGTCCT 6944334 >seq2 Length=9166667 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 2678669 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTC 2678610 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| | ||||| | || ||||||||||||| | || || ||||| Sbjct 2678609 TGATACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCA 2678550 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| | || ||| | || | ||| || || Sbjct 2678549 GCAGCGATTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTCTCCGACTACAA 2678490 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || || || || ||||| || || Sbjct 2678489 TATCCAAAAGGAGTCAACCCTCCATCTCGTCCT 2678457 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 2678440 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCT 2678381 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| |||||||| | || || |||||| Sbjct 2678380 GACACCATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAG 2678321 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 2678320 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGA 2678286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765391453520