Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 154 2e-32 >seq3 Length=8783590 Score = 154 bits (170), Expect = 2e-32 Identities = 363/544 (67%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||||||||| | | || | ||||| || || || || || ||||| ||||| Sbjct 2692423 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGGCC 2692482 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || ||||| || || || || || | ||| |||||||| || || || || Sbjct 2692483 ACGCTTCTTGAGCCAGAAAATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2692542 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33771 ||||||||||| ||| | | || | || | |||| || ||||| | || | Sbjct 2692543 AGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTCCTTGTCCTGGATCCATCGAATG-G 2692601 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 |||| || ||||||||| | ||||| || || || ||||| || ||||| || || Sbjct 2692602 CCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAATGGCGTTGAAGAGGTATGTTC 2692661 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 ||| | || || | || || || || | || || | || || || |||| Sbjct 2692662 TTTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGTAGGGAGTATGTCTCGGAGTGGATGT 2692721 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 | || || ||||| || |||||||| |||| |||||||| |||||| || || || Sbjct 2692722 TCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGAATCTGGACCTCGCCAC 2692781 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 ||||| || | | || || || || || |||||| ||| || || || || | | Sbjct 2692782 TGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCGAGGA 2692841 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068 || | || | | || |||| || | | || ||||| || | || ||| | Sbjct 2692842 TGTGGGAGACGAAGAACTGCTCATCTGCAGTCAGACGGTTGTTCCAGTCGTGGAGATCCT 2692901 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | ||| | || || ||||||| || || ||||||||||| || ||||| | || Sbjct 2692902 TGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGTACATCTGCC 2692961 Query 34129 AGAT 34132 |||| Sbjct 2692962 AGAT 2692965 Score = 136 bits (150), Expect = 5e-27 Identities = 404/615 (66%), Gaps = 6/615 (1%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | | ||| || |||| | || || || |||||||| Sbjct 3510712 AGGGCACTCGTTGGGGCACATGAGAGTCCATTCGCCGTTCTTCTCGACACGCTTCATAAA 3510771 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||||| ||||||||||| | || || || | | | || || || || Sbjct 3510772 AAGATCAGGGATCCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCTTCCTTACCGTG 3510831 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||||| ||||| |||||| | | | ||| | ||||| || || | ||| || || Sbjct 3510832 ATTCTTTCGGAGATCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATAGC 3510891 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | ||||| || ||||| || ||||| || | || | ||| |||||||| | || Sbjct 3510892 GAATGCACCAGGTCGCTTGTTACCACCCTGGTCGACATAACGAGCAGTGTTATTGAAGAC 3510951 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| |||| || |||||| || |||| ||||| |||| ||| || ||| | Sbjct 3510952 ACGTAGCATGGGAACAACACCGTTAGAAGTACCGTTGGTTCCGGCGATGTAAGAGCCAGT 3511011 Query 63521 GGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 |||||| || | | | | | | || || || || ||||| ||||| || | || | Sbjct 3511012 GGCACGGAT-TCGGTGAACGTTCAAGCCAATACCACCAGCCATCTTAGAAATCATGGCAC 3511070 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | || | || || ||||| || || ||||| || || |||| | || || || | Sbjct 3511071 AAGTCTTGAGGGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 3511130 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | |||| || | ||| || || || || |||| || || ||||| || || | Sbjct 3511131 ATGAGGACAGCTGAGGCTGAGGGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGA 3511190 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCT-CAATAGCTGAGTCTATATC-CCATTGATG 63757 | | || || | || ||||| |||| ||| | || || | ||| || | Sbjct 3511191 AGAACTTGCTGGACATGAGGTTGTATGTCTCCAAGACACGA-TCGACATCGTCACCCCAG 3511249 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 || || || || |||||||| | ||| |||||||| | ||| |||||||| || || Sbjct 3511250 -ATACCAACAGCAACACGCATGATCATATGCTGAGGACGCTCAGCAATTTTGCCGTCAAT 3511308 Query 63818 TTTCAACAAGTAGGA 63832 ||||| || ||||| Sbjct 3511309 ATTCAATAAATAGGA 3511323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816175037680