Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 136 5e-27 >seq3 Length=8783590 Score = 136 bits (150), Expect = 5e-27 Identities = 359/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| ||||||||||| | | || | |||||||| || || || || ||||| ||||| Sbjct 2692423 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGGCC 2692482 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 |||||| || ||||| || || || ||||| | || ||||| || || || || || Sbjct 2692483 ACGCTTCTTGAGCCAGAAAATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2692542 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCA-CTTTTGAG 36347 |||||||||| ||| | | || | || | |||| || ||||| | || | Sbjct 2692543 AGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTCCTTGTCCTGGATCCATCGAATG-G 2692601 Query 36348 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 36407 |||| || ||||||||| | ||||| || || || || || || ||||| || || Sbjct 2692602 CCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAATGGCGTTGAAGAGGTATGTTC 2692661 Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 ||| | || || | || || ||||| | || || | || || || |||| Sbjct 2692662 TTTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGTAGGGAGTATGTCTCGGAGTGGATGT 2692721 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527 | || || || || || |||||||| |||| |||||||| |||||| || || || Sbjct 2692722 TCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGAATCTGGACCTCGCCAC 2692781 Query 36528 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 36587 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 2692782 TGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCGAGGA 2692841 Query 36588 CATGTTTTATAAAATATTTTTCGTTTGGTGTTA---GTTTATTCCAATCATTGATATCTT 36644 || | || | | || | || || | | || ||||| || | || ||| | Sbjct 2692842 TGTGGGAGACGAAGAACTGCTCATCTGCAGTCAGACGGTTGTTCCAGTCGTGGAGATCCT 2692901 Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 36704 | || | ||| | || || ||||||| || || ||||||||||| || ||||| | || Sbjct 2692902 TGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGTACATCTGCC 2692961 Query 36705 AGAT 36708 |||| Sbjct 2692962 AGAT 2692965 Score = 118 bits (130), Expect = 1e-21 Identities = 401/617 (65%), Gaps = 6/617 (1%) Strand=Plus/Plus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | || ||||| | | ||| || |||| | || || || |||||| Sbjct 3510710 CCAGGGCACTCGTTGGGGCACATGAGAGTCCATTCGCCGTTCTTCTCGACACGCTTCATA 3510769 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 || |||||||| ||||||||||| | || | || | | | || || || || Sbjct 3510770 AAAAGATCAGGGATCCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCTTCCTTACCG 3510829 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||||| ||||| |||||| | | | ||| ||||| || || | ||| || Sbjct 3510830 TGATTCTTTCGGAGATCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATA 3510889 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | ||||| || ||||| || ||||| || | || | ||| |||||||| | Sbjct 3510890 GCGAATGCACCAGGTCGCTTGTTACCACCCTGGTCGACATAACGAGCAGTGTTATTGAAG 3510949 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 || | | ||| |||| || ||| || || ||||| ||||| |||| ||| || ||| Sbjct 3510950 ACACGTAGCATGGGAACAACACCGTTAGAAGTACCGTTGGTTCCGGCGATGTAAGAGCCA 3511009 Query 66312 CTTGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 66370 | ||||| || | | | | | | || || || || ||||| ||||| || | || Sbjct 3511010 GTGGCACGGAT-TCGGTGAACGTTCAAGCCAATACCACCAGCCATCTTAGAAATCATGGC 3511068 Query 66371 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 66430 || || | ||||| ||||| || || || || || ||| |||| | || || || Sbjct 3511069 ACAAGTCTTGAGGGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCAACAAGGAA 3511128 Query 66431 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 66490 || |||| || | || || || || || |||| || || ||||| || || Sbjct 3511129 GCATGAGGACAGCTGAGGCTGAGGGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGT 3511188 Query 66491 AAACCATTTTTCAGAAAGTAGATTGTACGTCT-CAATAGCTGAGTCTATATC-CCATTGA 66548 || | || || | || ||||| |||| ||| | || || | ||| || Sbjct 3511189 GAAGAACTTGCTGGACATGAGGTTGTATGTCTCCAAGACACGA-TCGACATCGTCACCCC 3511247 Query 66549 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 66608 | || || || || |||||||| | ||| |||||||| | ||| | || ||| || Sbjct 3511248 AG-ATACCAACAGCAACACGCATGATCATATGCTGAGGACGCTCAGCAATTTTGCCGTCA 3511306 Query 66609 ATTTTCAACAAGTAGGA 66625 || ||||| || ||||| Sbjct 3511307 ATATTCAATAAATAGGA 3511323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171310884040