Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 132 6e-26 >seq3 Length=8783590 Score = 132 bits (146), Expect = 6e-26 Identities = 366/556 (66%), Gaps = 10/556 (2%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||| |||||||| || | | || | |||||||| || || || || ||||| ||||| Sbjct 2692423 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGGCC 2692482 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 |||||| || ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 2692483 ACGCTTCTTGAGCCAGAAAATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2692542 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCA-CTTTTGAG 42254 |||||||||| ||| | | || | || | |||| || ||||| | || | Sbjct 2692543 AGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTCCTTGTCCTGGATCCATCGAATG-G 2692601 Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314 |||| || ||||||||| | ||||| || || || ||||| || ||||| || || Sbjct 2692602 CCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAATGGCGTTGAAGAGGTATGTTC 2692661 Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 ||| | || || | || || || || | || || | || || || |||| Sbjct 2692662 TTTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGTAGGGAGTATGTCTCGGAGTGGATGT 2692721 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 | || || ||||| || |||||||| |||| ||||||| || ||| || || || Sbjct 2692722 TCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGAATCTGGACCTCGCCAC 2692781 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 ||||| ||| | | || ||||| || || || ||| ||| || || || || | | Sbjct 2692782 TGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCGAGGA 2692841 Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATCATTGATATCTT 42551 || | || | | || || | || | || ||||| || | || ||| | Sbjct 2692842 TGTGGGAGACGAAGAACTGCTCATCTGCAGTCAGACGGTTGTTCCAGTCGTGGAGATCCT 2692901 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | || | ||| | || || | ||||| || || || |||||||| || ||||| | || Sbjct 2692902 TGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGTACATCTGCC 2692961 Query 42612 AGA--TATCATGATAT 42625 ||| ||||| || || Sbjct 2692962 AGATCTATCAGGAAAT 2692977 Score = 131 bits (144), Expect = 2e-25 Identities = 404/617 (65%), Gaps = 6/617 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||| | | ||| || || | | | || || |||||| Sbjct 3510710 CCAGGGCACTCGTTGGGGCACATGAGAGTCCATTCGCCGTTCTTCTCGACACGCTTCATA 3510769 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || |||||||| ||||||||||| | || || || | | | ||| || || || Sbjct 3510770 AAAAGATCAGGGATCCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCTTCCTTACCG 3510829 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||||| ||||| |||||| | | | ||| | ||||| || || | ||| || Sbjct 3510830 TGATTCTTTCGGAGATCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATA 3510889 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | || | ||| |||||||| | Sbjct 3510890 GCGAATGCACCAGGTCGCTTGTTACCACCCTGGTCGACATAACGAGCAGTGTTATTGAAG 3510949 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| |||| || ||| || || | ||| ||||| |||| ||| || ||| Sbjct 3510950 ACACGTAGCATGGGAACAACACCGTTAGAAGTACCGTTGGTTCCGGCGATGTAAGAGCCA 3511009 Query 72274 CTGGCACGAATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 ||||||| || | | | | | | | || || || || ||||| ||||| || | || Sbjct 3511010 GTGGCACGGAT-TCGGTGAACGTTCAAGCCAATACCACCAGCCATCTTAGAAATCATGGC 3511068 Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392 || || | ||||| ||||| || || || || || ||| |||| | || || || Sbjct 3511069 ACAAGTCTTGAGGGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCAACAAGGAA 3511128 Query 72393 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 72452 || |||| || | || || || || || |||| || || ||||| || || Sbjct 3511129 GCATGAGGACAGCTGAGGCTGAGGGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGT 3511188 Query 72453 AAACCATTTTTCAGACAGTAGATTGTACGTCT-CAATAGCTGATTCTATATC-CCATTGA 72510 || | || |||| || ||||| |||| ||| | || || | ||| || Sbjct 3511189 GAAGAACTTGCTGGACATGAGGTTGTATGTCTCCAAGACACGA-TCGACATCGTCACCCC 3511247 Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 | || || || || |||||||| | |||||||||||| | ||| | || ||| | Sbjct 3511248 AG-ATACCAACAGCAACACGCATGATCATATGCTGAGGACGCTCAGCAATTTTGCCGTCA 3511306 Query 72571 ATTTTCAACAAGTAGGA 72587 || ||||| || ||||| Sbjct 3511307 ATATTCAATAAATAGGA 3511323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137681547560