Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 129 6e-25 seq3 116 3e-21 seq1 107 2e-18 >seq2 Length=9166667 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| ||||||||||| || ||||| ||| Sbjct 2678442 CCACCACGAAGGCGGAGGACGAGATGGAGGGTTGACTCCTTTTGGATATTGTAGTCGGAG 2678501 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| | || || ||||||||||| ||||| Sbjct 2678502 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 2678561 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | |||||| | |||||| | Sbjct 2678562 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGAGGACTCCACC 2678621 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | ||| || ||||| || || || ||||| || ||||||| Sbjct 2678622 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGA 2678670 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | |||||||||||| || || ||||| ||| Sbjct 2678214 CCACCACGAAGGCGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGAA 2678273 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| | || || ||||||||||| ||||| Sbjct 2678274 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGA 2678333 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||||| | || | || || | ||||| | Sbjct 2678334 ATACCTTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 2678393 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 2678394 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2678440 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || | || | ||| |||||||| ||||||||||| ||| Sbjct 2677931 GCCACCTCGGAGGCGAAGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGA 2677990 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||||| ||||||||||| || |||| | ||||||||||| ||||| Sbjct 2677991 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGAGG 2678050 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| || ||||| | || | || || | ||||| | Sbjct 2678051 AATACCTTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCAC 2678110 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | ||| || || || || || || |||| Sbjct 2678111 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 2678148 >seq3 Length=8783590 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| ||||||| |||||| ||||| |||||||| || Sbjct 6944349 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 6944408 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | |||||||||||||| || || || || ||||| ||| || |||| Sbjct 6944409 GCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 6944468 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||| | || | ||| | || || || || || || Sbjct 6944469 ACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTAAGGGTC 6944528 Query 131218 TTTACGAAAATCTGCATGA 131236 || |||||||||||||||| Sbjct 6944529 TTGACGAAAATCTGCATGA 6944547 >seq1 Length=11790407 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||| ||| Sbjct 6428052 CCACCACGGAGACGGAGAACAAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 6427993 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| |||| || ||||| |||||||| || Sbjct 6427992 AGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGGGGA 6427933 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||||| Sbjct 6427932 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACC 6427873 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 |||| ||| | ||| || || || || || || |||||| Sbjct 6427872 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 6427834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011732071040