Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4 140 2e-28 seq3 102 5e-17 >seq4 Length=8388633 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8383081 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8383140 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8383141 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8383175 >seq3 Length=8783590 Score = 102 bits (112), Expect = 5e-17 Identities = 203/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGGTAAGGGAA 6252 || || ||||| || ||||| ||| ||| ||||| ||||| |||| ||||| |||| Sbjct 2612752 GATGCTTTCTATCGTTACAAGATGGAGCG--TCTGCAGACCAAGATCGAAGGTAAAGGAA 2612809 Query 6253 ACGGTATTAAAACCGTCATTGTCAACATGCCTGAA--GTCGCTAAGGCGCTCGGACGCCC 6310 ||||||| || |||||| |||||||| | | | | || || |||||| || || Sbjct 2612810 ACGGTATCAAGACCGTCGTTGTCAACCT--CAGCAGCGTTGCAGCCTCGCTCGCCCGTCC 2612867 Query 6311 TGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA 6370 | ||||| | || || ||||| | ||||||||| || || || | |||||| Sbjct 2612868 CGGTTCCTACGTCATCAAGTACTTCGGTTTCGAACTTGGTGCCCAAACCAACATTGATCC 2612927 Query 6371 CAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACT 6430 ||| |||| || | ||| | ||||| | || | | ||||||| ||||| || Sbjct 2612928 CAAGGACGACCGTTGGATCATCAACGGTGCCCACGATGCCCCCAAGCTCCAGGATCACCT 2612987 Query 6431 TGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 || ||||| || ||||||||| || || | ||| | ||||| |||||||| Sbjct 2612988 CGATGGCTTCATCAACAAGTTTGTTCTCTGCAAAAAGTGCAAGAACCCCGAGACCGA 2613044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946461127411