Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 145 1e-29 >seq3 Length=8783590 Score = 145 bits (160), Expect = 1e-29 Identities = 361/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| ||||||||||| | | || | |||||||| || || || || ||||| ||||| Sbjct 2692423 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGGCC 2692482 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794 |||||| || ||||| || || || ||||| | || ||||| || || || || || Sbjct 2692483 ACGCTTCTTGAGCCAGAAAATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2692542 Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 32850 |||||||||| ||| | | || | || | |||| || ||||| | || | Sbjct 2692543 AGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTCCTTGTCCTGGATCCATCGAATG-G 2692601 Query 32851 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 32910 |||| || ||||||||| | ||||| || || || || || || ||||| || || Sbjct 2692602 CCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAATGGCGTTGAAGAGGTATGTTC 2692661 Query 32911 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 32970 ||| | || || | || || ||||| | || || | || || || |||| Sbjct 2692662 TTTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGTAGGGAGTATGTCTCGGAGTGGATGT 2692721 Query 32971 TTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTAC 33030 | || || || || || ||||||||||||| |||||||| |||||| || || || Sbjct 2692722 TCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGAATCTGGACCTCGCCAC 2692781 Query 33031 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33090 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 2692782 TGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCGAGGA 2692841 Query 33091 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 33147 || | || | | || |||| || | | || ||||| || | || ||| | Sbjct 2692842 TGTGGGAGACGAAGAACTGCTCATCTGCAGTCAGACGGTTGTTCCAGTCGTGGAGATCCT 2692901 Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 33207 | || | ||| | || || ||||||| || || ||||||||||| || ||||| | || Sbjct 2692902 TGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGTACATCTGCC 2692961 Query 33208 AGAT 33211 |||| Sbjct 2692962 AGAT 2692965 Score = 136 bits (150), Expect = 5e-27 Identities = 408/622 (66%), Gaps = 6/622 (1%) Strand=Plus/Plus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | || ||||| | | ||| || |||| | || || || | Sbjct 3510705 CCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCATTCGCCGTTCTTCTCGACACGCT 3510764 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 ||||||| |||||||| ||||||||||| | || || || | | | || || | Sbjct 3510765 TCATAAAAAGATCAGGGATCCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCTTCCT 3510824 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||||| ||||| |||||| | | | ||| | ||||| || || | || Sbjct 3510825 TACCGTGATTCTTTCGGAGATCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGT 3510884 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | || || | | ||||| || ||||| || ||||| || | || | ||| ||||||| Sbjct 3510885 AGATAGCGAATGCACCAGGTCGCTTGTTACCACCCTGGTCGACATAACGAGCAGTGTTAT 3510944 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | | ||| |||| || ||| || || ||||| ||||| || | ||| || Sbjct 3510945 TGAAGACACGTAGCATGGGAACAACACCGTTAGAAGTACCGTTGGTTCCGGCGATGTAAG 3511004 Query 63318 TTCCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATT 63376 ||| ||||||| || | | | | | | || || || || ||||| ||||| || Sbjct 3511005 AGCCAGTGGCACGGAT-TCGGTGAACGTTCAAGCCAATACCACCAGCCATCTTAGAAATC 3511063 Query 63377 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 63436 | || || || | ||||| ||||| || || || || || ||| |||| | || Sbjct 3511064 ATGGCACAAGTCTTGAGGGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCAACA 3511123 Query 63437 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496 || || || |||| || | || || || || || |||| || || ||||| Sbjct 3511124 AGGAAGCATGAGGACAGCTGAGGCTGAGGGGTACCAGCGTTGAATAGTGTGGGGGAAGCA 3511183 Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT-CAATAGCTGAGTCTATATC-CC 63554 ||||| || | || || | || ||||| |||| ||| | || || | ||| | Sbjct 3511184 TGAGTGAAGAACTTGCTGGACATGAGGTTGTATGTCTCCAAGACACGA-TCGACATCGTC 3511242 Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614 | | || || || || |||||||| | ||| |||||||| | ||| | || ||| Sbjct 3511243 ACCCCAG-ATACCAACAGCAACACGCATGATCATATGCTGAGGACGCTCAGCAATTTTGC 3511301 Query 63615 TGTTTATTTTCAACAAGTAGGA 63636 || || ||||| || ||||| Sbjct 3511302 CGTCAATATTCAATAAATAGGA 3511323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630566407600