Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq1 93.3 4e-14 seq2 89.7 4e-13 >seq3 Length=8783590 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || ||| |||| ||||| ||||| | || Sbjct 6944545 ATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 6944486 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 6944485 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 6944426 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| || || ||| | |||||| ||||||| | ||| |||||| Sbjct 6944425 CAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 6944366 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 6944365 ATCCAGAAGGAGTCTAC 6944349 >seq1 Length=11790407 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| || || || || || | || ||| | Sbjct 6427834 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 6427893 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| ||||| || || ||||| || | Sbjct 6427894 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGATT 6427953 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | |||||| ||| ||| ||||||| |||||||| || || Sbjct 6427954 GATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 6428013 Query 22407 AGAATCCAC 22415 || || || Sbjct 6428014 GGAGTCTAC 6428022 >seq2 Length=9166667 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || ||||| | | || ||| | ||| | |||| Sbjct 2678134 ACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGACACCATCGACAACGTCAAGTCC 2678075 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || ||||| |||||||| || || || || || || || ||||| ||||| Sbjct 2678074 AAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAGCAGCGACTCATCTTTGCTGGCAAG 2678015 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| ||| ||| | ||||| ||||||||||| || || || ||| Sbjct 2678014 CAGCTTGAGGATGGCCGAACCCTTTCCGACTACAACATTCAGAAGGAGTCAACC 2677961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727074106265