Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 131 3e-25 seq2 95.1 2e-14 >seq3 Length=8783590 Score = 131 bits (144), Expect = 3e-25 Identities = 402/617 (65%), Gaps = 21/617 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||| |||||||||| |||||||||||||||||||||||| Sbjct 2692142 TCGAAAAAGTTGGTCTTGCCACCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTA 2692201 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||||| ||| | || || || |||| | || || || |||||||| | Sbjct 2692202 GCCTTGTACACCTTCTCGTTACCGAGAGCAACGAGCAGACGATCAGCGACAAACTCGATG 2692261 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | ||||||||||| | | | |||||| | |||||| | | Sbjct 2692262 TACTGCTTCATGAGGTTGGAGTTCATGCCCAGAAGAGCACAAGGGAGAGCCTCAGTAAGG 2692321 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || ||| ||| || || | || ||| ||| ||| | | | | Sbjct 2692322 AACTCCTGCTCAATGGTAACGGCATCGGTGATGATGTCCTGGATCATCTGCTTGCTGGCA 2692381 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | || || | |||| ||||| | |||| | ||| ||||||||||| Sbjct 2692382 CGTC----CCTTAAGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTCGTC 2692437 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | ||| |||||||| | ||||| ||| ||||||| Sbjct 2692438 ACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCA 2692497 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 ||| || | | ||||| || ||| | | |||||| || | | |||||||| Sbjct 2692498 GAAAATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAGGCAACAAG 2692557 Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCC 252030 || | |||||| || ||||||||| | | ||| || ||||| | ||| Sbjct 2692558 ACGTTGAGCAAATGAGGAGTCCTTGTCCTGGATCCATCGAA----TG-GCCCAGTCAGCC 2692612 Query 252031 TTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCG 252090 ||||||| | || || || || || || | ||||| | | | | |||| Sbjct 2692613 TTCTTTCGGATGCAAGGAATAGTGTCAATGGCGTTGAAGAGGTATGTTCTTTGGGCAGGC 2692672 Query 252091 TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAAC 252150 |||| |||| | |||| || || ||||| |||| || |||||| || | | Sbjct 2692673 TCCTTGATGTAGGTGTCAATGAGTAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATG 2692732 Query 252151 ATCTGGTAAGCATAGAA 252167 |||||| || | ||||| Sbjct 2692733 ATCTGGAAACCGTAGAA 2692749 >seq2 Length=9166667 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 7429979 GGTGAGGATCTCTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 7430038 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| |||||||||| | || || ||||| ||||||||| || | Sbjct 7430039 CAGACTCATCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCT 7430098 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 7430099 GGAAAGTCCACCCTTATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 7430157 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 7430158 GGACGAGGTCAAGACTGTTTTCGTCGAGCACGACTTGGACTCCGCT 7430203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834416382221