Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 168 1e-36 seq3 161 2e-34 seq1 154 3e-32 >seq2 Length=9166667 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || || ||||| |||||||| || || |||||| Sbjct 2678442 CCACCACGAAGGCGGAGGACGAGATGGAGGGTTGACTCCTTTTGGATATTGTAGTCGGAG 2678501 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | || || ||||| || ||| Sbjct 2678502 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 2678561 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| | |||||| ||||| || || | || || || Sbjct 2678562 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGAGGACTCCACC 2678621 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || ||||||||||||||||| || ||||| ||| Sbjct 2678622 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGATG 2678672 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || ||||| || || ||||| Sbjct 2678214 CCACCACGAAGGCGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGAA 2678273 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || || ||||| || ||| Sbjct 2678274 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGA 2678333 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| | ||||||| ||||||||||| | || || || Sbjct 2678334 ATACCTTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 2678393 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 2678394 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2678440 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || || ||||| || ||||| Sbjct 2677932 CCACCTCGGAGGCGAAGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAA 2677991 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| || ||||| || ||| Sbjct 2677992 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGAGGA 2678051 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| | ||||||| ||||||||||| | || || || Sbjct 2678052 ATACCTTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 2678111 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || || ||||||||||||| Sbjct 2678112 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 2678148 Score = 122 bits (134), Expect = 2e-22 Identities = 442/676 (65%), Gaps = 37/676 (5%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| |||||||||| | || ||| |||| || ||||| || || || |||||| Sbjct 7430988 CGCCATTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTGTCGATGTGAGCGAAAGCG 7430929 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 7430928 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 7430869 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || || |||||||| ||||| || |||| |||||| ||||| ||||| || || Sbjct 7430868 ATGAGC-TCACCAGTGAGGACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCGAT 7430810 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGC---GAGTTCACGTTG--CTGAAGATCTCA 225214 ||| |||| || ||| || | ||| ||| | || || |||| | | | | Sbjct 7430809 AACGGCAATACGAGATCCCAGAGAGCACTGGAAGGAGATGTCGCTGATCTGAGGCTTTGA 7430750 Query 225215 GGG-CCAGTTTGGTAAGCAAAGGCCACGC------CACGCAGCTTCATGATGGCACGGTC 225267 || |||| |||| |||| || | |||| || ||||| | | Sbjct 7430749 GGTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAGA------ATGGCCTTGGC 7430699 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | |||||| ||||| |||||||||||||| ||| | || | | || Sbjct 7430698 CTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCGATCTCGGACTC 7430639 Query 225328 CTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGGTTTC 225386 || |||||||| || ||| |||| || || |||||||||| |||||| | Sbjct 7430638 GCCAAGCTCGTAGTAGGACTTAGCGGAAGGGTTGCGG-GCGACGAAAGCAGCCAGGTTAC 7430580 Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCG 225445 | || | ||||||||| || |||||| ||||| || ||| | ||| || | Sbjct 7430579 CCTTGTAACGCTTGAGCTTGAA--TCG-CTCGTAGTGAACGATGTGCTG-GCAGACGTTG 7430524 Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAG-GCCCTTGA 225503 |||||||| ||||||||||| || || |||||||| | || | ||| | ||||| Sbjct 7430523 TCAAGGAAACCAGAGTCGTGAGAGACGATGATGGAAGTGCAAG-----CAGAGTTCTTGA 7430469 Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 ||| | |||||| ||||| | || |||| ||||| ||||| ||||| || | Sbjct 7430468 GGTACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAGCA 7430409 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 ||| || || | | | || || ||| || | | |||||||| ||||| || | Sbjct 7430408 ACAGAATATCGGGAGCCTCGAAGACGGCACGGCACAAGGCAAGCTTCATCTTCCAACCAC 7430349 Query 225624 CGGACAGGGAGCCGAT 225639 | || |||| || ||| Sbjct 7430348 CAGAGAGGGCGCTGAT 7430333 >seq3 Length=8783590 Score = 161 bits (178), Expect = 2e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || || ||||| || |||||||| || ||| Sbjct 6944319 CCACCACGGAGGCGGAGGACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 6944378 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || ||| Sbjct 6944379 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGA 6944438 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 6944439 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 6944498 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || | |||||| || || ||||| |||||||||||||| |||||||| |||| Sbjct 6944499 TCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCATGATGC 6944550 Score = 111 bits (122), Expect = 3e-19 Identities = 552/866 (64%), Gaps = 31/866 (4%) Strand=Plus/Plus Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997 ||| || ||||| ||||| || | || || |||||| ||||||| |||||| | || Sbjct 2692108 GACACCGGCCTTTTGGTAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCACCCAG 2692167 Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAG 10057 || ||| |||||||||||| |||||||| || || ||| || |||||| Sbjct 2692168 AGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTAGCCTTGTACACCTTCTCGTTACCGAG 2692227 Query 10058 TGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCAT 10117 || || | || ||||| || |||||||||||||| |||| |||| |||||||| Sbjct 2692228 AGCAACGAGCAGACGATCAGCGACAAACTCGATGTACTGCTTCATGAGGTTGGAGTTCAT 2692287 Query 10118 GCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTC 10177 ||| | | || |||| || || || ||| |||| || ||| || || || Sbjct 2692288 GCCCAGAAGAGCACAAGGGAGAGCCTCAGTAAGGAACTCCTGCTCAATGGTAACGGCATC 2692347 Query 10178 CTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACA 10233 || |||| || | || | | || || | || || | || | | Sbjct 2692348 GGTGATGATGTCCTGGATCATCTGCTTGCTGGCACGTC----CCTTAAGGTGAGAGTGGA 2692403 Query 10234 GGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293 |||| |||| | ||| || |||||||| || ||||| ||||||||| || Sbjct 2692404 GGAGGCAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGG 2692463 Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353 |||||| |||||||| || || || ||||||||||| | | || | ||| || Sbjct 2692464 TCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCAAAGGCACCGCTGA 2692523 Query 10354 ACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGCGCG 10413 | | | |||||| ||| | |||| || || || | || || ||| ||| | | Sbjct 2692524 AGAAGATACCCTCAACGGCAGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTC-CTTG 2692582 Query 10414 AAAAGTAT--TTCGA--GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATA 10469 | || |||| |||||| | |||||||||| | | ||| || || || || Sbjct 2692583 TCCTGGATCCATCGAATGGCCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAATG 2692642 Query 10470 GCCTCGAAGAGCT-TGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGA 10528 || | |||||| | |||| | | || |||| || | |||| ||| ||||| Sbjct 2692643 GCGTTGAAGAGGTATGTT-CTTTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGTAGGGA 2692701 Query 10529 GTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCCG 10587 |||| |||| ||||| | |||| | |||| || ||||||| ||| || ||| Sbjct 2692702 GTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAT-CGAGCCT 2692760 Query 10588 AGGGGTCCGTGACTTCCTCGGCA--AAGTTGTTGTTC-AGGTTCTCCATCACCATGCCAT 10644 ||| | || ||||| || | | | | | |||||||| | || || |||| Sbjct 2692761 CGGGAATCTGGA---CCTCGCCACTGAATCGCTCAACAAGGTTCTCGTTGACGATACCAT 2692817 Query 10645 CGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA--- 10701 | | | || ||||| |||||||||| || |||| ||||||| | ||| Sbjct 2692818 CAGAGGCAGCGAAGAAAGCGAGGATGTGGGAGACGAAGAACTGCTCATCTGCAGTCAGAC 2692877 Query 10702 -GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAA 10760 ||| || |||||| | ||||| | || | || |||||| | |||||||| Sbjct 2692878 GGTTGTT----CCAGTCGTGGAGATCCTTGGAAAGATCGATCTCCTCGGCTGTCCAGAAG 2692933 Query 10761 GTGGCAACGGCCTTCTTGTACATCTG 10786 | || | ||||||||||||||||| Sbjct 2692934 GAAGCCTCTGCCTTCTTGTACATCTG 2692959 >seq1 Length=11790407 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| || |||||| Sbjct 6428052 CCACCACGGAGACGGAGAACAAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 6427993 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || |||||||| || ||| Sbjct 6427992 AGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGGGGA 6427933 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 6427932 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACC 6427873 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || | ||||||||| || ||||| |||||||| ||||| Sbjct 6427872 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6427835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620314829320