Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 120 7e-22 seq3 107 5e-18 >seq2 Length=9166667 Score = 120 bits (132), Expect = 7e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | || || ||||||||||| ||||||| | Sbjct 2678442 CCACCACGAAGGCGGAGGACGAGATGGAGGGTTGACTCCTTTTGGATATTGTAGTCGGAG 2678501 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || ||||| |||| ||||| || | || Sbjct 2678502 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 2678561 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || || | || || || || |||| ||| || || || Sbjct 2678562 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGAGGACTCCACC 2678621 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| ||||| ||||| || ||||||||||| || ||||| ||| Sbjct 2678622 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGATG 2678672 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | || || || |||||||| ||||||| Sbjct 2678214 CCACCACGAAGGCGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGAA 2678273 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || ||||| |||| ||||| || | || Sbjct 2678274 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGA 2678333 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| || | || ||||| || || | || || || || Sbjct 2678334 ATACCTTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 2678393 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 2678394 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2678440 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | ||| || || || | || || || || || || |||||| Sbjct 2677929 TGGCCACCTCGGAGGCGAAGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCG 2677988 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || || || | || || || || ||||| || ||||| || | Sbjct 2677989 GAAAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGA 2678048 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| ||||||||||| || | || ||||| || || | || || || Sbjct 2678049 GGAATACCTTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCC 2678108 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || ||||| ||||| ||||| || || || |||||||||| Sbjct 2678109 ACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 2678148 >seq3 Length=8783590 Score = 107 bits (118), Expect = 5e-18 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| || || || ||||| || |||||| Sbjct 6944319 CCACCACGGAGGCGGAGGACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 6944378 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| || ||||| || || ||| Sbjct 6944379 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGG---TCCGGG 6944435 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | ||| || || Sbjct 6944436 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCC 6944495 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || |||||||||||||| || || ||||||||||| |||||||| ||| Sbjct 6944496 ACCTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCATGATG 6944549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651664307718