Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 9e-14 seq2 86.0 1e-11 >seq3 Length=8783590 Score = 93.3 bits (102), Expect = 9e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || ||| | || |||| ||| || || ||| | || || Sbjct 2692356 ATCATCACCGATGCCGTTACCATTGAGCAGGAGTTCCTTACTGAGGCTCTCCCTTGTGCT 2692297 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| | ||||||||||| | |||||| ||||||||||| || || || || || | Sbjct 2692296 CTTCTGGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTCGCTGATCGTCTG 2692237 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | || || ||| | ||||| |||||||| | | |||||||| | ||| |||||| Sbjct 2692236 CTCGTTGCTCTCGGTAACGAGAAGGTGTACAAGGCTACAAACCCCTTCGACTTCATGGAG 2692177 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| || || || || || ||||| ||||| ||||| || Sbjct 2692176 AACATCTCTCTGGGTGGCAAGACCAACTTTTTCGAGAAGCGCGT 2692133 >seq2 Length=9166667 Score = 86.0 bits (94), Expect = 1e-11 Identities = 169/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||| ||| | | ||| | || ||| | ||| | ||||| || ||| || |||| | Sbjct 7430228 AGTCGATGGTGGTCATCTCAGTATCAGCGGAGTCCAAGTCGTGCTCGACGAAAACAGTCT 7430169 Query 334165 TCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAG 334224 | | | ||| |||||| || || | ||| |||| || |||||||| || | Sbjct 7430168 TGACCTCGTCCTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATAAGGG 7430109 Query 334225 TTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGA 334284 | || || || | ||||| || || || |||||||| || | |||||||| ||| || Sbjct 7430108 TGGACTTTCCAGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGACGGA 7430049 Query 334285 ACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACA 334344 | || | ||| |||||||| || |||| || || ||||| || ||| | || | Sbjct 7430048 GATGAGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAGA 7429989 Query 334345 GATCCTCACC 334354 |||||||||| Sbjct 7429988 GATCCTCACC 7429979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102877442352350