Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq2 93.3 4e-14 >seq3 Length=8783590 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || ||||| | | Sbjct 6944352 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 6944411 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 6944412 AAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 6944471 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 6944472 TTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTG 6944531 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 6944532 ACGAAAATCTGCATG 6944546 Score = 109 bits (120), Expect = 5e-19 Identities = 246/369 (67%), Gaps = 17/369 (5%) Strand=Plus/Minus Query 52476 GGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCAC 52535 ||| | ||||| || ||||| ||| ||||||| | || || || ||||| || || ||| Sbjct 2692482 GGCCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 2692423 Query 52536 ACGGACTTTGCGTGCCTCT---ACT---ACAAGACGCG-CGTGACCGAAAAATTGGATTC 52588 || |||||||| |||||| ||| || | | | |||| | | || Sbjct 2692422 ACTGACTTTGCCTGCCTCCTCCACTCTCACCTTAAGGGACGTGCCAGCAA---------- 2692373 Query 52589 GGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGC 52648 | | | ||||| | ||| ||| || || || | || || ||||||| |||| | Sbjct 2692372 GCAGATGATCCAGGACATCATCACCGATGCCGTTACCATTGAGCAGGAGTTCCTTACTGA 2692313 Query 52649 CGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTT 52708 || || || | || |||||||||||| | | |||| ||||||||||||| Sbjct 2692312 GGCTCTCCCTTGTGCTCTTCTGGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTT 2692253 Query 52709 TGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCC 52768 ||| || ||||||||| | || ||||| | ||| | ||| ||| || || Sbjct 2692252 TGTCGCTGATCGTCTGCTCGTTGCTCTCGGTAACGAGAAGGTGTACAAGGCTACAAACCC 2692193 Query 52769 GTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 || || || ||| | ||||| || || | |||||||||||||||||||||||||| || Sbjct 2692192 CTTCGACTTCATGGAGAACATCTCTCTGGGTGGCAAGACCAACTTTTTCGAGAAGCGCGT 2692133 Query 52829 CGGCGAGTA 52837 | ||| || Sbjct 2692132 TGCCGACTA 2692124 >seq2 Length=9166667 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | || | ||| | || | | |||||||||| ||||||||||||||| Sbjct 2677931 GCCACCTCGGAGGCGAAGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGA 2677990 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || || | | |||| || ||||| ||||| ||||| Sbjct 2677991 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGAGG 2678050 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| || || | | || | |||||| | |||||||| Sbjct 2678051 AATACCTTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCAC 2678110 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||||| || | || || ||||| || || || || Sbjct 2678111 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 2678146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261277206320