Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq1 122 1e-22 seq3 111 2e-19 >seq2 Length=9166667 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||||||||||||||| || || || |||| || ||||||||||||||||| Sbjct 2678477 CTCCTTTTGGATATTGTAGTCGGAGAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAA 2678536 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || ||||||||| ||||| ||||| | Sbjct 2678537 AATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTGACATT 2678596 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || || ||||| || | |||||||| ||||| || || || || || Sbjct 2678597 GTCGATAGTATCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2678656 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 2678657 GAAGATTTGCAT 2678668 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||||||||| || || || | || || ||||||||||| ||||| Sbjct 2678249 CTCCTTCTGGATATTGTAGTCGGAAAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAA 2678308 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | | ||||| ||| |||||| ||||| ||| Sbjct 2678309 AATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTGGACTTGA-CGT 2678367 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| || | |||||||| ||||| || || || || | Sbjct 2678368 TGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 2678427 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 2678428 CGAAGATCTGCAT 2678440 Score = 86.0 bits (94), Expect = 7e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || || || | || || ||||||||||| || || Sbjct 2677967 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAA 2678026 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||| ||| |||||| ||||| ||| Sbjct 2678027 GATGAGTCGCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTGGACTTGA-CGT 2678085 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| || | |||||||| ||||| || || || || | Sbjct 2678086 TGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGA 2678145 Query 46581 C 46581 | Sbjct 2678146 C 2678146 >seq1 Length=11790407 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||| ||| |||||| ||||| ||||||||||| || || || | || ||| Sbjct 6428034 ACAAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG 6427975 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| ||||| ||||| ||||| | || | || |||||||||| | Sbjct 6427974 AGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 6427915 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | ||||| || || || || | |||||||| ||| Sbjct 6427914 ATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTG 6427855 Query 46565 CCCGTCAGCGTTTTAACAAA 46584 |||||||| || || || || Sbjct 6427854 CCCGTCAGGGTCTTCACGAA 6427835 >seq3 Length=8783590 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||||||| || ||||| | || ||| Sbjct 6944337 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 6944396 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | ||||||||||| | || | || |||||||||| | Sbjct 6944397 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 6944456 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | |||||| || ||||| || | ||||| || || Sbjct 6944457 ATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 6944515 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || || || ||||| Sbjct 6944516 CCCCGTAAGGGTCTTGACGAAAATCTGCAT 6944545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237121148120