Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 179 4e-40 seq1 125 7e-24 seq2 109 5e-19 >seq3 Length=8783590 Score = 179 bits (198), Expect = 4e-40 Identities = 554/847 (65%), Gaps = 19/847 (2%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || ||| | || ||||| ||||| || || || || ||| || ||| | Sbjct 2692118 TTTTGGTAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCACCCAGAGAGATGTTC 2692177 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 ||| || || |||||||| | | ||||| ||| | | |||| || | ||| Sbjct 2692178 TCCATGAAGTCGAAGGGGTTTGTAGCCTTGTACACCTTCTCGTTACCGAG-AG--CAACG 2692234 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | || || || ||||||||||| ||| |||| | | | || | ||||| Sbjct 2692235 AGCAGACGATCAGCGACAAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCCAGA 2692294 Query 132781 AGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 ||| |||| || || || || || || || ||||| |||| || || ||||||| Sbjct 2692295 AGA-GCACAAGGGAGAGCCTCAGTAAGGAACTCCTGCTCAATGGTAACGGCATCGGTGAT 2692353 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899 ||| ||| | | | ||| | ||| | | || | | | ||| || Sbjct 2692354 GATGTCCTGGATCATCTGCTTGCTGGCACGTCCCTTAAGGTGAGAGTGGAGGAGGCAGGC 2692413 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 |||||| || | |||||||| | || ||||| |||||| ||| |||| || || Sbjct 2692414 AAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGG 2692473 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 ||||||||| || || |||||||| || || | ||| || || ||||||| || Sbjct 2692474 CATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCAAAGGCACCGCTGAAGAAGATACC 2692533 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATC 133077 ||| ||||| || || || || || || | | || | || || ||| ||| |||| Sbjct 2692534 CTCAACGGCAGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTCCTTGTCCTG--GATC 2692591 Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137 || || | ||||| || ||||| | | || ||| || || || || |||||||| | Sbjct 2692592 CATCGAATGGCCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAATGGCGTTGA-- 2692649 Query 133138 AAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTT 133195 | | | | |||| | ||| | | ||||||||| ||||| || || | | Sbjct 2692650 AGAGGTATGTTCTTTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGTAGGGAGTATGTCT 2692709 Query 133196 CCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCT 133255 | ||||| | ||||||||| ||| || || ||||| ||||| || |||||| | || Sbjct 2692710 CGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGAATCT 2692769 Query 133256 GCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315 | || || | ||| ||||| || || || ||||||||||| || || ||| |||| Sbjct 2692770 GGACCTCGCCACTGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGCAGCGA 2692829 Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGT 133372 | || || || | ||| || ||| |||| | | ||| || | ||||| Sbjct 2692830 AGAAAGCGAGGATGTGGGAGACGAAGAACTGCTCATCTGCAGTCAGACGGTTGTTCCAGT 2692889 Query 133373 CGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTT 133432 || | |||||||| || || | ||||||| | ||||| || || ||||| || || | Sbjct 2692890 CGTGGAGATCCTTGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCTGCCTTCT 2692949 Query 133433 TGTACAT 133439 ||||||| Sbjct 2692950 TGTACAT 2692956 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || |||||| | || || ||| | || Sbjct 6944545 ATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 6944486 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 6944485 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 6944427 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | |||||||| | ||||||||| Sbjct 6944426 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 6944367 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || |||| || || Sbjct 6944366 CATCCAGAAGGAGTCTACTCTTCACCTGGTCCTCCG 6944331 >seq1 Length=11790407 Score = 125 bits (138), Expect = 7e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 6427835 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 6427894 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| | Sbjct 6427895 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGATTG 6427954 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 6427955 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 6428014 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || ||||| | || || ||| Sbjct 6428015 GAGTCTACTCTGCACCTTGTTCTCCGT 6428041 >seq2 Length=9166667 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||||||| | || || ||| || | Sbjct 2678668 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 2678609 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || || || | ||||| || || ||||| | ||||| Sbjct 2678608 GATACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAG 2678549 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||||| || |||| || |||||| ||||||||| Sbjct 2678548 CAGCGATTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTCTCCGACTACAAT 2678489 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| | || || ||| | || || || Sbjct 2678488 ATCCAAAAGGAGTCAACCCTCCATCTCGTCCTCCG 2678454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || || || ||||| ||||||||| |||| || ||| | | |||| | | Sbjct 2678148 TCGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGACACCATCG 2678089 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| || || || || ||||| | ||||| ||||| ||| Sbjct 2678088 ACAACG-TCAAGTCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAGCAGCGACTC 2678030 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | || ||||| |||||||||||| || ||| Sbjct 2678029 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTTCCGACTACAACATTCAGAAG 2677970 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || | || || || | || || || | |||| |||| Sbjct 2677969 GAGTCAACCCTCCACCTTGTTCTTCGCCTCCGAGGTGGCC 2677930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171668359040