Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-22 >seq1 Length=11790407 Score = 123 bits (136), Expect = 2e-22 Identities = 693/1098 (63%), Gaps = 11/1098 (1%) Strand=Plus/Minus Query 517214 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 517273 || ||||| ||| || ||||| ||| || || ||| |||| | || || | Sbjct 3197849 TTGGTAATGACAATCTTGTTGGACTTGCCGGTGCCCTTCTCAACGGCGGAGACGTTCATG 3197790 Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 ||||| |||||||| | ||| || || || ||||| || || || || | ||||||| Sbjct 3197789 ATACCGTTGGCATCAAGATCGAAGGTAACCTCAATCTGGGGAACACCACGGGGAGCAGGG 3197730 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | || | |||| | || || || || ||| | || ||| Sbjct 3197729 GGGATACCAGTAAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTGGTGCGCTGACGCTCA 3197670 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||| | | |||||| || ||| || || || || | || | || || | Sbjct 3197669 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 3197610 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || || || || || || ||||| | || | |||||||| |||||||| || Sbjct 3197609 GACTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGCG 3197550 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571 || || | ||| ||||| ||||| | |||||| | || | ||| | || | | || Sbjct 3197549 GTCTCAATACCGAGAGAGAGAGGGGCGACATCGAGGAGCAGAATCTCGTTGGTGGCCTTG 3197490 Query 517572 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | || | | |||| ||||| || || || | ||| ||||| || |||||||| ||| Sbjct 3197489 CTGGAGGTATCACCAGAGAGAATGGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCA 3197430 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 517690 || || || | | | || | | || || ||||| ||| | | || | ||| Sbjct 3197429 TCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGAAGTAATCGGTGATGAGCT-TCTG 3197371 Query 517691 -ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 || || ||||| | ||||| || || | || || || || || | || || || Sbjct 3197370 GACACGGGGGATACGGGTAGATCCACCGACGAGGACGATCTCGTGGACAAGGGACTTGTC 3197311 Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGA 517809 | || | || | || || ||||| | | | | || || | || Sbjct 3197310 GATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGATAGTGGATCGGAAGAGATCCTG 3197251 Query 517810 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 517867 || || || ||||| ||| | || || || | || || ||||| || ||||| Sbjct 3197250 GCAGAGCTCCTCGAAACGAGCACGGGT--GATGGAGGTGTAGAAGTCAATACCCTCGAAG 3197193 Query 517868 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 517927 | ||| || | || || | || |||| ||||| || || | || || ||||||||| Sbjct 3197192 AGAGAGTCGATCTCGATGGAGGTCTGAGCGGAAGAGGAGAGAGTTCGCTTGGCACGTTCA 3197133 Query 517928 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTCAAATCTGTTTTATATTT 517986 || || || | || | || | || | | | || || || ||| |||||| || Sbjct 3197132 CAAGCGGTTCGGAGACGACGCAGAGCACGAACGTTAGTGCTT-AAGTCTTTTTTATGCTT 3197074 Query 517987 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 518046 | |||||| || | ||| | | || ||||| || || || |||||||| ||||| Sbjct 3197073 ACGCTTGAACTCGTTAACGAAGTGGTTAACCAGACGGTTGTCGAAGTCTTCACCACCCAA 3197014 Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 518106 | ||| | || | || | | || | ||| | || || |||| | | |||| Sbjct 3197013 GTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCCTCCTCAATGGTAAGGAGAGA 3196954 Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 518166 ||||| ||| |||||||| | ||| || ||||| || || || || || Sbjct 3196953 AACATCGAAGGTACCACCACCAAGATCGAAGATAAGGACGTTGCGCTCACCCTCAACCTT 3196894 Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 || || ||||| || |||| |||||||| || || || || || |||| | ||| || Sbjct 3196893 CTTGTCGAGACCGTAGGCAATGGCAGCAGCGGTAGGCTCGTTGATGATTCGGAGAACGTT 3196834 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||||| ||||| || ||||| || || || || | ||| || ||||| || || || Sbjct 3196833 GAGACCGGCAATGAGACCGGCATCCTTGGTAGCCTGACGTTGAGAGTCGTTGAAGTAGGC 3196774 Query 518287 AGGAACAGTAATAACGGC 518304 ||| ||||| | |||||| Sbjct 3196773 AGGGACAGTGACAACGGC 3196756 Score = 95.1 bits (104), Expect = 9e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||| ||||||||| | |||| || |||||||| || ||||||||| | ||||||||| Sbjct 2913815 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 2913756 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTC 668966 || || |||||| |||| |||| || |||| | || || ||||| |||| Sbjct 2913755 ACTGTCATTACTGGTGATGCCAACCTTTCTCTACACGAGGTCGGTGTGCCTC 2913704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780813418183786