Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 352 4e-92 seq3 87.8 2e-12 seq4 82.4 1e-10 >seq1 Length=11790407 Score = 352 bits (390), Expect = 4e-92 Identities = 996/1528 (65%), Gaps = 25/1528 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 || || || || || ||||| || ||||| | | ||| || || || || || || Sbjct 3197924 TCGTCCTCCTCCTTGTACTTCTCAGCATCGTTAAGCATGCGCTCGATCTCCTCCTTGGAC 3197865 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || ||||| |||||| | ||| || || | | |||| || | Sbjct 3197864 AGGCGGCCCTTGTCGTTGGTAATGACAATCTTGTTGGACTTGCCGGTGCCCTTCTCAACG 3197805 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || ||||||| |||||| | || | ||| || || | Sbjct 3197804 GCGGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTAACCTCAATCTGGGGAACA 3197745 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | || ||||| || | || || | || | | |||| ||| | Sbjct 3197744 CCACGGGGAGCAGGGGGGATACCAGTAAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTG 3197685 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || ||| ||||| || ||||| | || || |||| || || || Sbjct 3197684 GTGCGCTGACGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAG 3197625 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || || | || || | | |||| Sbjct 3197624 GTAGAGAAGACCTCGGACTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCTTGGTC 3197565 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| || || | || ||||| ||||| | || || | ||| | | Sbjct 3197564 ATCATACCACCAGCGGTCTCAATACCGAGAGAGAGAGGGGCGACATCGAGGAGCAGAA-- 3197507 Query 6989 TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGACCG 7037 ||| | || || |||| |||| | | ||||| || ||||| | Sbjct 3197506 TCTCG------TTGGTGGCCTTGCTGGAGGTATCACCAGAGAGAATGGCAGCCTGGACAG 3197453 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 || ||||| || || |||||||||||||| || | || || | || || ||||| | Sbjct 3197452 CGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGA 3197393 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | ||||| | | | | || | ||||| || || ||||||||||| | |||| Sbjct 3197392 AGTAATCGGTGATGAGCTTCTGGACACGGGGGATACGGGTAGATCCACCGACGAGGACGA 3197333 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217 | || | || || || |||||||| | ||| ||| ||||| || | | Sbjct 3197332 TCTCGTGGACAAGGGACTTGTCGATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGA 3197273 Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277 || ||||| | ||| || || ||||| ||||| |||||||| ||||| || | Sbjct 3197272 TAGTGGATCGGAAGAGATCCTGGCAGAGCTCCTCGAAACGAGCACGGGTGATGGAGGTGT 3197213 Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA 7337 |||| |||| || ||| | | || || || || |||| || || || | || || | Sbjct 3197212 AGAAGTCAATACCCTCGAAGAGAGAGTCGATCTCGATGGAGGTCTGAGCGGAAGAGGAGA 3197153 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 |||||||| || || ||||| || ||||| | |||||| || ||||| |||| | Sbjct 3197152 GAGTTCGCTTGGCACGTTCACAAGCGGTTCGGAGACGACGCAGAGCACGAACGTTAGTGC 3197093 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 | ||||| ||||| ||||| || ||||| | | |||||| || || | | Sbjct 3197092 TTAAGTCTTTTTTATGCTTACGCTTGAACTCGTTAACGAAGTGGTTAACCAGACGGTTGT 3197033 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| ||||||||||||||||| || || || || || | ||||| || |||||||| Sbjct 3197032 CGAAGTCTTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCCT 3196973 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | |||||| | | | |||||||| || ||||||||||| || || || || || |||| Sbjct 3196972 CCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCAAGATCGAAGATAAGGACGT 3196913 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | || | || ||||| ||||||||||| || || || || || || || || | Sbjct 3196912 TGCGCTCACCCTCAACCTTCTTGTCGAGACCGTAGGCAATGGCAGCAGCGGTAGGCTCGT 3196853 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || || || ||| ||| || || ||||| | ||||| || || || || |||| Sbjct 3196852 TGATGATTCGGAGAACGTTGAGACCGGCAATGAGACCGGCATCCTTGGTAGCCTGACGTT 3196793 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || ||||| |||||||| ||||| || || || |||| |||| ||| ||||| | Sbjct 3196792 GAGAGTCGTTGAAGTAGGCAGGGACAGTGACAACGGCGTTGTTGACAGTCTCGCCGAGGT 3196733 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 | || || || | || ||| ||||| || | ||| | || ||||| |||| | | Sbjct 3196732 AAGACTCAGCAGTCTCACGCATCTTGGTGAGGATCATAGCGGAGATCTCCTCAGGGGTGA 3196673 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877 | ||| | ||||| || || ||||| || || |||| || |||| | | || Sbjct 3196672 AGGTCTTCTTCTCACCCTTGAACTCAACCTCGATGTTGGGCTT-GCCGC--CCTTGTCGA 3196616 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 | | | | | | ||||||||| | ||||||| || | ||||| | | Sbjct 3196615 CGATTGTGAAAGGGAAGTGCTTCATATCGGCCTGGACCTCAGCATCGGCGAACTTGCGAC 3196556 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 |||| | ||||| || || || || ||||| | |||||||||||| |||||||| | Sbjct 3196555 CGATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTGG 3196496 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | || || || || ||||| || | || || || ||||| | || ||||| |||| Sbjct 3196495 CGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTTC 3196439 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTC 8085 | || || |||||||| || || || || Sbjct 3196438 GGTTACCCTGGTCGTTGGCGATGATATC 3196411 >seq3 Length=8783590 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| ||||||||||| || | ||| || || || || || || | | ||| || ||| Sbjct 5251253 CTTCTCGAGACCGTAGGCAAGAGCGGCGGCAGTAGGCTCGTTGACGACACGGAGGACGTT 5251194 Query 7657 CAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCT-TGTCGTTGCGAATCGTTAAAGTA 7713 ||||| ||||| ||| | || || || || ||| ||||| || || ||||| ||||| Sbjct 5251193 GAGGCCGGCAAT--TTGACCAGCGTCCTTGGT-GCTCTGTCGCTGAGAGTCGTTGAAGTA 5251137 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||| ||||| || ||||| |||| | ||| |||| ||| || | || ||| | || Sbjct 5251136 GGCGGGGACGGTGACGACGGCGTTCTTGATGGGCTTAGAGAGGTAGGCCTCGGCGGTCTC 5251077 Query 7774 TTTCATTTTGGTAAGAAC 7791 ||||||||| | || || Sbjct 5251076 CTTCATTTTGTTCAGGAC 5251059 >seq4 Length=8388633 Score = 82.4 bits (90), Expect = 1e-10 Identities = 166/243 (68%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | ||| || || || ||||| || || || || ||||| Sbjct 6547376 TCGAAATCCTCACCACCAAGGTGGGTGTCACCAGCGGTAGCGAGAACCTCGAAAATACCG 6547435 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | || ||||| || ||||||||||| || || | || | | Sbjct 6547436 TCGTCAATGGAGAGGAGAGAGACATCGAAGGTACCACCACCAAGATCGTA---GACAATG 6547492 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || || | | |||||| || |||||||| |||||||| || || || || || Sbjct 6547493 ATC-TGGCGCTCACCATCGTTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTC 6547551 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||| || || ||| || || ||||| | | || || || || || ||||| Sbjct 6547552 GTTGACAATTCGGAGGACGTTGAGACCGGCAATGATACCGGCGTCCTTGGTGGCCTGTCG 6547611 Query 7696 TTG 7698 || Sbjct 6547612 CTG 6547614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131363012040