Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-34 seq4 95.1 2e-14 >seq3 Length=8783590 Score = 161 bits (178), Expect = 1e-34 Identities = 524/809 (65%), Gaps = 25/809 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| ||||||| || || | |||||| || || ||| | ||| ||| Sbjct 3511284 CCTCAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGTGACGATGTCGATCGTGTC 3511225 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||||||||||| || |||||| | | |||| || || | || || || ||| Sbjct 3511224 TTGGAGACATACAACCTCATGTCCAGCAAGTTCTTCACTCATGCTTCCCCCACACTATTC 3511165 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || || || ||||| || |||||| ||| | |||||||| Sbjct 3511164 AACGCTGGTACCCCTCAGCCTCAGCTGTCCTCATGCTTCCTTGTTGATATGAAGGAGGAC 3511105 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || |||| || |||| |||||| || || ||| ||||||| Sbjct 3511104 AGCATTGACGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCTAAGATGGCTGGT 3511045 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 ||||| || || || | || || | |||| ||| || || || || Sbjct 3511044 GGTATTGGCTTGAACGTTCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGAACCAAC 3510985 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||| || |||| ||||| || || || || ||| || || ||||| Sbjct 3510984 GGTACTTCTAACGGTGTTGTTCCCATGCTACGTGTCTTCAATAACACTGCTCGTTATGTC 3510925 Query 111972 AACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCAC 112025 |||| | ||| | |||| || || |||| |||| |||||||| |||||| Sbjct 3510924 GACCAGGGTGG---TAACAAGCGACCTGGTGCATTCGCTATCTACCTTGAGCCTTGGCAC 3510868 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGT 112083 || ||| || | ||||||||||| | || || || ||| | || |||| |||| | Sbjct 3510867 GCCGATGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAAGAGGTCCGCGCT 3510808 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 || || || ||| ||||| ||||| || ||||| || |||||| | || ||| ||| Sbjct 3510807 --CGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTTATGAAGCGTGTCGAGAAGA 3510750 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 ||| | ||| ||||| | || || || || || || || | || | |||| Sbjct 3510749 ACGGCGAATGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCTGACTGCTACGGTG 3510690 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGA----AA--GTCGGGCGACTGCGA 112257 | |||||||| || || ||| ||||||||| ||| || |||| | || | Sbjct 3510689 ACGAGTTTGAGGCTCTGTACGAGAAGTACGAGAGAGAGGGTAAGGGTCGCAAGTCTATCA 3510630 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || |||| || | ||| | || || || || | || || ||||| || | | Sbjct 3510629 AGG-CCCAGAAGC-----TTTGGTACGCCATCCTTGAGGCCCAGACAGAGACCGGAAACC 3510576 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | ||||| ||||| || ||| |||| ||||| || |||||||| | ||| | Sbjct 3510575 CTTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTTGGTACCA 3510516 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATC 112406 | || |||||||| || || || ||| Sbjct 3510515 TTCGAAGCTCCAACCTTTGCACCGAGATC 3510487 Score = 145 bits (160), Expect = 9e-30 Identities = 216/301 (72%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 102033 GAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCT 102091 ||||||||| |||||| |||| || || ||||| ||| | ||||| | || Sbjct 2692710 GAGACATACTCCCTACTCATTGACACCTACATCAAGGAGCCTGCCCA-AAGAACATACCT 2692652 Query 102092 CTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTG 102151 ||| | ||||| | || |||| || || | |||||| || || ||||| || || Sbjct 2692651 CTTCAACGCCATTGACACTATTCCTTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATG 2692592 Query 102152 GTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGG 102210 | | | |||| | | | | | |||||| | || || | || ||||| ||||||| Sbjct 2692591 GATCCAGGACAAGGACTCCT-CATTTGCTCAACGTCTTGTTGCCTTTGCTGCCGTTGAGG 2692533 Query 102211 GTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGC 102270 ||||||||||| ||| |||| | |||||| |||||||||||||| || ||||||| Sbjct 2692532 GTATCTTCTTCAGCGGTGCCTTTGCCTCTATTTTCTGGCTCAAGAAGCGTGGCCTCATGC 2692473 Query 102271 CAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTG 102330 | ||||| ||||||||||||||| ||||||||||||||||| || ||| || |||| Sbjct 2692472 CTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTG 2692413 Query 102331 C 102331 | Sbjct 2692412 C 2692412 >seq4 Length=8388633 Score = 95.1 bits (104), Expect = 2e-14 Identities = 190/275 (69%), Gaps = 10/275 (4%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||| |||||||| || ||||||| ||| || || || | ||| | | |||| || Sbjct 1453286 GGCGTCAATCTCGTCGATGAAGATGATACAGGGAGCGTTCTTGCGGCCCTCGGCAAACAG 1453345 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 16182 || ||||||||| | || ||||||||||||||||| || || | | | || || Sbjct 1453346 GTCTCGTACACGCGAAGGTCCAACACCAACAAACATCTCAACGAATTCGGAGCCGCTCAC 1453405 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || ||| || || ||| ||||| || |||| ||| || | |||||||| | Sbjct 1453406 ACT-GAAGAAAGGCACTCCAGACTCACCAGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 1453464 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 16299 |||| || || || | || |||||||||||| |||||||| || || |||| | Sbjct 1453465 TACCGGGGGGTCCAGCCAAGATGGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 1453524 Query 16300 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATCTC 16333 |||| || ||||| ||||| | ||||| ||| Sbjct 1453525 ---TCTCGGGCTGCTTCAAGAAGCT-CACAAACTC 1453555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740995570320