Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 251 8e-62 seq4 161 1e-34 >seq3 Length=8783590 Score = 251 bits (278), Expect = 8e-62 Identities = 1024/1593 (64%), Gaps = 57/1593 (4%) Strand=Plus/Plus Query 109569 AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTG 109628 ||| ||||| ||||||||||||| | |||| ||| | || |||| |||||| || Sbjct 3509722 AATCTCCCACACAGTCTTGTACAGAGCTTTGACATCGGCAGGGATGTTGGGGATGTTCTG 3509781 Query 109629 AATAGAGCC---ACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGAC 109685 ||||| || | |||| | | || | | |||||| | | ||||| ||||| | Sbjct 3509782 GATAGAACCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAGACCCAT 3509838 Query 109686 CTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCG 109745 | ||||| | | ||| |||||| || ||||| |||||||| || Sbjct 3509839 GTCGACAAGATCCTTCAGAAGCCAGGGGTTGACAACCTGGAATTCGCCAGCAAGGACTCG 3509898 Query 109746 TCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGC 109805 || |||||||||| | |||||||| ||||| ||||| |||||||| || || || | Sbjct 3509899 GCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGA 3509958 Query 109806 AGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTAC 109865 ||| || || ||||| ||||| | ||| |||||||| |||| ||| | |||||| || Sbjct 3509959 CGTGCTGGCAGTAGGCATAGGAGCAACGAGTAGACTGTTGCGGATACCGTGCGTCTTAAC 3510018 Query 109866 CCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACAT 109925 ||| || | | ||||| || || | || ||| ||| |||||| Sbjct 3510019 ATCCTCCCGGAGGGATTCCCAGTCCCAAAGGTCAGAGGGTTTGA------CATTCCACAT 3510072 Query 109926 ATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTC 109985 || || || | |||||| | |||||||| ||||||||| | ||| | ||||| Sbjct 3510073 GTCAAACTGGAGAATACCCTCCGAGGCAGGAGAGCCCTTGAAAGTGGAGTAGGGGCCCTC 3510132 Query 109986 AACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATG 110045 ||| ||| | || || | || || || || || || ||||| || || || Sbjct 3510133 CTCCTTGGCGAGCTGCACAGAGGTGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATTTG 3510192 Query 110046 AGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAA----GACCACAAAGAATAAACA 110101 |||| |||| ||| | | || ||||| | || ||| ||| Sbjct 3510193 CTTGTTCAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGTGCAAGGAAGG---- 3510248 Query 110102 CATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAG 110161 |||| || ||||| |||||||| ||||||||||| || || |||||| | |||| Sbjct 3510249 CATCAGCGAGACCTTGAACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTGCGAG 3510308 Query 110162 CAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCT 110221 | || || ||||| ||| ||||| | | || | || | || | || Sbjct 3510309 CTTCTTGCACAGGGTAGTGGTTTACATCGATAATCTTGTTCAAGTTGCG-GACAACGACT 3510367 Query 110222 TC-GTGATTTCATGGAGTTT------GTCGTAATCGAACGTTTTCGTCTCCTTATTGACA 110274 | |||| || || || || ||||||| | | | | ||| | ||| ||| | Sbjct 3510368 TGAGTGACATCGTGAAGCTTCTTGAAGTCGTAA-CAAGCATCTTCATAA--TTAATGAAA 3510424 Query 110275 TATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTAT 110334 | || |||| | || ||||| ||||| |||| | ||| || | || ||| Sbjct 3510425 GAA---GGCAGAGACAAGGAGGCAAGGTTGCAAACAGCAACCTCATCAGGGGCGCAGTAC 3510481 Query 110335 TCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGAT 110394 || | || || || || | |||||| || |||| ||| | |||||| || || Sbjct 3510482 TCAATGATCTCGGTGCAAAGGTTGGAGCTTCGAATGGTACCAAGGTTCTTTTGGTTGCTC 3510541 Query 110395 TTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTG 110454 ||| |||||| |||||| ||||||||| | ||| | || || || ||||| | || Sbjct 3510542 TTGCGGTTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCA 3510601 Query 110455 AGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCC 110511 || ||||| | ||| | | || | ||| || || ||||| | | ||| || | Sbjct 3510602 AGGATGGCGTACCAAAGCTTCTG-GGCCTTGATAGACTTGCG--ACCCTTACCCTCTCTC 3510658 Query 110512 TCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCC 110571 |||||||| ||||| ||||||| || | ||||| |||| || || | Sbjct 3510659 TCGTACTTCTCGTACAGAGCCTCAAACTCGTCACCGTAGCAGTCAGCCAGGCCAGGGCAC 3510718 Query 110572 TTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631 | || ||| || | ||| | ||| | || || ||| || | |||||| || || ||| Sbjct 3510719 TCGTTGGGGCACATGAGAGTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCA 3510778 Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691 || ||||| | ||| ||| |||||||| || ||||||| | ||| || || Sbjct 3510779 GGGATCCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCTTCCTTACCGTGATTCTTT 3510838 Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA-TGGA 110750 || || || | || || | || ||| | |||||| || || || |||| ||||| || | Sbjct 3510839 CGGAGATCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATAGCGAATGCA 3510898 Query 110751 -----TCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805 || ||| || |||| |||| ||||| || || ||| ||||||||| | Sbjct 3510899 CCAGGTCGCTTGTTACCACCC---TGGTCGACATAACGAGCAGTGTTATTGAAGACACGT 3510955 Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA 110865 ||||| |||| || || | || ||| || || || || || | ||||| Sbjct 3510956 AGCATGGGAACAACACCGTTAGAAGTACCGTTGGTTCCGGCGATGTAAGAGCCAGTGGCA 3511015 Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTC 110924 || || ||| | | || ||||||||||| ||| |||| ||| |||| | || Sbjct 3511016 CGGATTCGGTGAACGTTCAAGCCAATACCACCAGCCATCTTAGAAATCATGGCACAAGTC 3511075 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 | |||| ||| | || ||||| ||||| || |||| | ||| || ||||| || Sbjct 3511076 T-TGAGGGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGA 3511134 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044 |||| |||||| |||| || || || ||||| ||||| || | |||||| ||| || Sbjct 3511135 GGACAGCTGAGGCTGAGGGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGA--AG 3511192 Query 111045 ACCTTG--GGACATCTTGTTGTATGTGT-CGAGTGCGGAGGGTACATCTTTACCGTGAAT 111101 | |||| |||||| ||||||||| | | || || | ||||| | ||| || Sbjct 3511193 AACTTGCTGGACATGAGGTTGTATGTCTCCAAGACACGATCG-ACATCGTCACCCCAGAT 3511251 Query 111102 ACCAATGGCAACTCGCATGAACATATATTGAGG 111134 ||||| ||||| ||||||| ||||| ||||| Sbjct 3511252 ACCAACAGCAACACGCATGATCATATGCTGAGG 3511284 >seq4 Length=8388633 Score = 161 bits (178), Expect = 1e-34 Identities = 320/465 (69%), Gaps = 24/465 (5%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || || || || | | || | ||| || ||||| | ||||| ||| | Sbjct 1453101 CGATCGAATCGTCCAGGTCGCATCAAGGCCTTATCCAGCATATCCGCTCGGTTAGTACCA 1453160 Query 11563 GCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || | ||| || | || | |||| ||| || ||||||||||| || |||| |||| Sbjct 1453161 GCGAGGACAACCA--CCTG-CTCACGGGTGTTAAAGCCGTCCATTTCAGTAAGAATCTGG 1453217 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTT---- 11675 || | |||| ||||||||| |||||| | | ||| | |||| | ||| | Sbjct 1453218 TTCAGCGTCGCTTCACGCTCGTCGTTGCCGCCAAAACC-CTTGCCACTCTCTTGTCGCGC 1453276 Query 11676 ---ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 ||||| ||||||||||| |||||||| | |||||| || ||| || ||| Sbjct 1453277 GCGACCGATGGCGTCAATCTCGTCGATGAAGATGATACAGGGAGCGTTCTTGCGGCCCTC 1453336 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 | || || || ||||||||| | ||||||||| || |||||||||||||| || | Sbjct 1453337 GGCAAACAGGTCTCGTACACGCGAAGGTCCAACACCAACAAACATCTCAACGAA-TTCGG 1453395 Query 11793 GGCAG--AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 || | |||||||| ||| || || |||||||||||| |||| || || | Sbjct 1453396 AGCCGCTCACACTGAA-GAAAGGCACTCCAGACTCACCAGCCGTGGCCTTGGCAAGCAAC 1453454 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---A 11907 |||||||| ||||| || | ||||| | | ||| || || |||||||||||||| Sbjct 1453455 GTCTTACCAGTACCGGGGGGTCCAGCCAAGATGGCACCTCGTGGGATCTTGGCACCTAGC 1453514 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 || |||| | ||| |||| ||| | |||| ||||| |||| Sbjct 1453515 TTTTCAAACT---TCTCGGGCTGCTTCAAGAAGCTCACAAACTCC 1453556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974667441800