Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 8e-15 seq1 82.4 5e-11 >seq2 Length=9166667 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| |||||| |||| |||| || ||||| || || || || Sbjct 2678250 TCCTTCTGGATATTGTAGTCGGAAAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAA 2678309 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| | || | || ||||| || ||||| |||||| Sbjct 2678310 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTGGACTTGACGTTG 2678369 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || |||| ||| ||||| || || ||||| ||||| || Sbjct 2678370 TCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 2678429 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 2678430 AAGATCTGCATA 2678441 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| |||| |||| || ||||| || || ||||| Sbjct 2677968 TCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 2678027 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | || ||||| || ||||| |||||| Sbjct 2678028 ATGAGTCGCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTGGACTTGACGTTG 2678087 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | ||| || |||| ||| ||||| || || || || ||||| || Sbjct 2678088 TCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 2678146 >seq1 Length=11790407 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/186 (70%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| |||| |||| || ||||| || || || || Sbjct 6428016 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAG 6427957 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| || ||||| | || | ||||||||||| ||||| ||||| || Sbjct 6427956 ATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 6427899 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || ||| || |||| ||| ||||| || ||||| || ||||| Sbjct 6427898 --TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTT 6427841 Query 34967 CACAAA 34972 ||| || Sbjct 6427840 CACGAA 6427835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632883878568