Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=8783590 Score = 116 bits (128), Expect = 4e-21 Identities = 493/772 (64%), Gaps = 10/772 (1%) Strand=Plus/Plus Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 |||||||| ||||| ||||| |||| || ||| |||| | |||| ||| | | |||| Sbjct 3510557 TCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGGATGGCGTACCAA 3510616 Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA--GTATATA 48120 | || ||||| ||| | | | ||| || ||||| || ||| | | Sbjct 3510617 AGCTTCTGGGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTACAGA 3510676 Query 48121 ACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCA 48180 | |||||| || || || || | | | | ||||| || || || || ||||| | Sbjct 3510677 GC--CTCAAACTCGTCACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATGA 3510734 Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTA 48240 | ||| || | | || | || | ||||||| | ||| || ||||||||||| | Sbjct 3510735 GAGTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCAGGGATCCAAAGAGCCA 3510794 Query 48241 TAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGT 48300 || | || | || | | ||||| || || |||| || || ||||| || | Sbjct 3510795 GGAACAGGTCACGAGCGCGGACCTCTTCCTTACCGTGATTCTTTCGGAGATCAAGGAACT 3510854 Query 48301 CCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTAC 48360 | | | ||| || ||||| || || | || || || | | |||| ||||| || |||| Sbjct 3510855 CGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATAGCGAATGCACCAGGTCGCTTGTTAC 3510914 Query 48361 CTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCAT 48420 | || || || | ||| | ||||| || || | || | || ||| || |||| ||| | Sbjct 3510915 CACCCTGGTCGACATAACGAGCAGTGTTATTGAAGACACGTAGCATGGGAACAACACCGT 3510974 Query 48421 TTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA--TTGA 48478 | || |||| |||||||| | || ||| ||| | || | || || || | Sbjct 3510975 TAGAAGTACCGTTGGTTCCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGAACGTTCA 3511034 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || |||||||| ||||| ||||| || | ||||| || |||||||| || || Sbjct 3511035 A--GCCAATACCACCAGCCATCTTAGAAATCATGGCACAAGTCTTGAGGGTATCGTAGAT 3511092 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACA 48598 || || || || || || |||||| | || || || |||| || || ||| Sbjct 3511093 ACCGTCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGG 3511152 Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 || || | || |||| ||| || || |||||| | || | || || | | || Sbjct 3511153 GGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTGGACATGAGGTT 3511212 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 ||||| || | ||| ||| | ||| || | ||||| | || |||||||| | Sbjct 3511213 GTATGTCTCCAAGACACGATCGACATCGTCACCCCAG-ATACCAACAGCAACACGCATGA 3511271 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 ||||| ||||| | ||| |||||||| | || ||||| | ||| || Sbjct 3511272 TCATATGCTGAGGACGCTCAGCAATTTTGCCGTCAATATTCAATAAATAGGA 3511323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107528228840