Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 179 1e-39 seq1 122 3e-22 seq2 84.2 6e-11 >seq3 Length=8783590 Score = 179 bits (198), Expect = 1e-39 Identities = 256/356 (72%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| || || | ||||| |||||| || ||||| || |||| Sbjct 2692763 CCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACAT 2692704 Query 133365 ATTC--TACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCA 133421 | || ||||| ||||| || |||||||| || | | ||| ||| ||| || | |||| Sbjct 2692703 ACTCCCTACTC--ATTGACACCTACATCAAGGAGCCTGCCCA-AAGAACATACCTCTTCA 2692647 Query 133422 ACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCC 133481 |||||||| | ||||||| || |||||| |||||||||| ||| |||||||| Sbjct 2692646 ACGCCATTGACACTATTCCTTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATGGATCC 2692587 Query 133482 AGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttt 133541 |||||||| | |||||| ||||| ||||| ||||||| || ||||| || | Sbjct 2692586 AGGACAAGGACTCCTCATTTGCTCAACGTCTTGTTGCCTTTGCTGCCGTTGAGGGTATCT 2692527 Query 133542 ttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGAC 133601 | ||||| ||||| || ||||||||| ||||| || |||||||| | | ||||| | Sbjct 2692526 TCTTCAGCGGTGCCTTTGCCTCTATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTC 2692467 Query 133602 TGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || || || ||||| || || || | ||||||| |||||||| || |||||| Sbjct 2692466 TGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCC 2692411 Score = 158 bits (174), Expect = 4e-33 Identities = 491/755 (65%), Gaps = 15/755 (2%) Strand=Plus/Plus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | ||||| ||| ||||| || || ||||| || | ||||| | Sbjct 3510474 CGCAGTACTCAATGATCTCGGTGCAAAGGTTGGAGCTTCGAATGGTACCAAGGTTCTTTT 3510533 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || | ||| || ||||||||| || ||| | ||| |||| ||||| ||| Sbjct 3510534 GGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCT 3510593 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || || || ||| || | |||| || || |||| | || | Sbjct 3510594 GGGCCTCAAGGATGGCGTACCAAAGCTTCTGGGCCTTGATAGACTTGCGACCCTTACCCT 3510653 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 | ||| || ||| ||||| | | || |||||||| || ||| ||| |||| Sbjct 3510654 CTCTCTCGTACTTCTCGTACAGAGCCTCAAACTCGTCACCGTAGCAGTCAGCCAGGCCAG 3510713 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT-----TTATTACCGATTACACGCTCCAT 155920 |||||| | |||||| | || | ||| || || || ||| |||||| ||| Sbjct 3510714 GGCACTCGTTGGGGCACATGAGAGTCCA--TTCGCCGTTCTTCTCGA---CACGCTTCAT 3510768 Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980 ||| | |||| ||||| ||| ||| ||||| | || ||| || | || Sbjct 3510769 AAAAAGATCAGGGATCCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCTTCCTTACC 3510828 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||||||||| || || || | ||| || | ||| | || ||||| || || || Sbjct 3510829 GTGATTCTTTCGGAGATCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGAT 3510888 Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 ||| || |||| | |||| |||||||| || ||||| |||||||| |||||||| Sbjct 3510889 AGCGAATGCACCAGGTCGCTTGTTACCACCCTGGTCGACATAACGAGCAGTGTTATTGAA 3510948 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 ||||| |||||| |||| || ||| || ||||| || ||||||||| || | || || Sbjct 3510949 GACACGTAGCATGGGAACAACACCGTTAGAAGTACCGTTGGTTCCGGCGATGTAAGAGCC 3511008 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAG 156216 || | || | |||| | | ||||||||||| | |||| |||||||| | Sbjct 3511009 AGTGGCACGGATTCGGTGAACGTTCAAGCCAATACCACCAG-CCATCTTAGAAATCATGG 3511067 Query 156217 CGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGAT 156276 | || ||| | |||| | | ||||| ||||| || || | ||| | || Sbjct 3511068 CACAAGTCTTGAGGGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCAACAAGGA 3511127 Query 156277 AGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAA 156336 |||| || | ||||| | || || ||||||||||||||||| || | |||||| Sbjct 3511128 AGCATGAGGACAGCTGAGGCTGAGGGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAG 3511187 Query 156337 TAAAATACTTATTAGACATATAATCGTATGTCTCC 156371 | || |||| | ||||| | |||||||||| Sbjct 3511188 TGAAGAACTTGCTGGACATGAGGTTGTATGTCTCC 3511222 >seq1 Length=11790407 Score = 122 bits (134), Expect = 3e-22 Identities = 196/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| || || |||||||| ||||||||| || || || || || |||||||| || Sbjct 2912277 CTTGACCAATCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATAAG 2912336 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| | |||||| |||| || |||||||| | ||| || || || | || | Sbjct 2912337 ACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGAGTGAGACCACGAAGGTA 2912396 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| |||||||||||||||| || || || || | || |||||| ||||| || || Sbjct 2912397 AGAGTTCTCAACGAAACCACGAGCTTCCGGAGAGTAATCATCCTTGGTGAAGTGAGGAAG 2912456 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 ||| | | || | ||| | || || |||||||| || || | ||||| || | Sbjct 2912457 GGTACGATACTTGAAACCGAAAGGAATGCGCTTTCCTTCGACAATTTGCTGACCGACAAG 2912516 Query 302823 CGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || | ||||||| ||||| || | | | |||||||| || Sbjct 2912517 CGCAGTCATCTGTGAAATGTTGATAGAAGAACCCTTGGAACC 2912558 Score = 111 bits (122), Expect = 5e-19 Identities = 384/591 (65%), Gaps = 20/591 (3%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 ||||| || || | | || || ||||| | | ||||||| || | ||| | || || Sbjct 8519519 ATAAGTCCGCAAATTTCGCAAACGTGGACTCGGAAAGCATCCGACACCTCAAACAGACGC 8519460 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| || |||||||| | ||||||||||||||| ||||| || ||||| Sbjct 8519459 TCCTTCAAGAAGGCAGCAGCACCGTGGGCAATCATACAATCACGTTCCATCTCTCCGAAT 8519400 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| ||||| | ||| ||| | ||||| || || | | | | ||| Sbjct 8519399 CGCAGACCACCATCTCGAGCACGACCTTCGACGGGCTGTCGGGTCATAATCTGAACGGGA 8519340 Query 251587 CC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || | ||||| || ||| || | ||||| || |||||||||||| | Sbjct 8519339 CCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAGTA 8519284 Query 251643 TGCGGGACCGATGAAGA--TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATA 251700 || || |||| ||||| || || || |||| ||| || | | || ||||| Sbjct 8519283 TGTAGGTCCGAAGAAGACTTGAGCG-CGGAGCTTGC-GTCCGGTATGGCCATTGTACATG 8519226 Query 251701 ACTTCGTTTCCATTAGATTCATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCA 251757 || || || ||||| ||||| ||| || ||||| || | | | Sbjct 8519225 ACCTCAAAACCTCGAGATTGGTAACCGTGTTTTCTCAAAAGCTCGGACACGGAGT---CG 8519169 Query 251758 ATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTG 251817 | ||| | | || || |||| || | | |||| | | | || || Sbjct 8519168 ACGGTGACATCAGTGAATGGCGTTGCGTCACCCTCCATACCCTCCAGTGTTGAGACCTTA 8519109 Query 251818 CCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTG 251877 | ||||| ||| ||| ||||| || ||||||||| ||||| || || || ||| Sbjct 8519108 CTCAAAAGACACTCGATCAAATGGGCAATTGTCATACGAGACGGAATGGCGTGAGGGTTG 8519049 Query 251878 ATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-T 251936 ||||| || || ||| ||| || || ||||||||||||||| | || |||| | Sbjct 8519048 ATGATAATATCTGGTGTCAAACCTTCTCTGCTGAAGGGCATATCCTCCT-GTCGATAAGT 8518990 Query 251937 GTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || || |||||||| |||||||||||| ||||| |||||||| Sbjct 8518989 AACACCGATTGTACCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 8518939 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| |||| ||||| |||||| | |||||||| Sbjct 2911489 AGAATTTCCTTGAGACGAGGCACACCCAGGGTGACGTT---CTTGGAAGAGACACCAGCG 2911545 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| ||||| || | ||||| | ||||||||||| || || || | Sbjct 2911546 AAATGGAAAGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAA 2911605 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 2911606 ACACCAACCATTTCGCCAGG 2911625 >seq2 Length=9166667 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 || ||| ||||||| ||||| || || | ||| |||||||| |||||||| | ||||| Sbjct 1820010 GCAAGACCACCAAGAGAGTCCCGATCCAAGAAGTTAGTAGGCTCGTCAAGCACAAGAAGA 1819951 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || || | ||||||| ||| |||| | || || || ||||||||||| || || || Sbjct 1819950 TGGGGGTTGTTCCACATGGCTCCAGCAATGACGACTTTGACCTTCTGTCCACCAGAAAG 1819892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814186762997