Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-26 seq3 122 1e-21 seq1 96.9 4e-14 >seq4 Length=8388633 Score = 138 bits (152), Expect = 1e-26 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| |||||||| ||||| || |||||| | || |||||| | || |||||| Sbjct 1830168 GCCTCCAACTATCTCGACATTAAGCCCCTTCTCGATGTCGGATGCAAGACCGTTGCCAAC 1830109 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 |||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1830108 ATGATCAAGGGCAAGTCGCCAGAGGAGATCCGCAAGACCTTCAACATCA 1830060 >seq3 Length=8783590 Score = 122 bits (134), Expect = 1e-21 Identities = 180/252 (71%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | |||||| ||||||||||||||||||||| | || ||||| Sbjct 2692115 GCCTTTTGGTAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCACCCAGAGAGATG 2692174 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | |||||| ||| ||| ||||| | || Sbjct 2692175 TTCTCCATGAAGTCGAAGGGGTTTGTAGCCTTGTACACCTTCTCGTTACCGAGAGCAACG 2692234 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868 ||||| || || |||||||||||||||||||| ||||||| || ||||||||| || Sbjct 2692235 AGCAGACGATCAGCGACAAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCCAGA 2692294 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 |||| | | || || | ||| | | ||||| | ||| || ||||| ||| || Sbjct 2692295 AGAGCACAA--GGGAGAGCCTCAGTAAGGAACTCCTGCTCAATGGTAACGGCATCGGTGA 2692352 Query 868929 TGATCTGCCTGG 868940 |||| | ||||| Sbjct 2692353 TGATGT-CCTGG 2692363 Score = 111 bits (122), Expect = 2e-18 Identities = 204/291 (70%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| |||| || || ||||||||||| ||||| Sbjct 2692429 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGGCCACGCTT 2692488 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296 ||||||||| || || | | | || || ||| ||| ||||| ||||| ||||| ||| Sbjct 2692489 CTTGAGCCAGAAAATAGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCA 2692546 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353 ||| | | || || | ||||| || ||| |||||| | |||||| || Sbjct 2692547 AAGGCAACAAGACGTTGAGCAAA--TGAGGAG----TCCTTGTCCTGGATCCATCGAATG 2692600 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412 |||||||| ||||| || | | | || | ||||| |||||| ||||||| || Sbjct 2692601 GCCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAATGGCGTTGAAGAGGTATGTT 2692660 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| ||| || ||||||| |||||||| || || || || || ||||| Sbjct 2692661 C-TTTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGTAGGGAGTATGTCTC 2692710 >seq1 Length=11790407 Score = 96.9 bits (106), Expect = 4e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||| || || || ||||| ||||| | ||| | || ||||| ||| Sbjct 5523584 GACAGCACTGGCGGTACCGTCACCTGCGTCATCCGCAATGCGCCTTCTGGACTCGGTGAG 5523643 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | ||||| | || |||||||||||| |||| ||||| ||| | Sbjct 5523644 CCTTGCTTCGACAAGCTTCAGGCCACCCTAGCCCACGCCATGATGTCCATCCCCGCCGTC 5523703 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 |||| |||||| | ||| ||| || Sbjct 5523704 AAGGCCTTCGAGTTGGGCTCCGGCTT 5523729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107124346292377