Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 147 3e-29 seq4 138 2e-26 >seq3 Length=8783590 Score = 147 bits (162), Expect = 3e-29 Identities = 234/331 (71%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| ||| || || ||||||||||| ||||| Sbjct 2692429 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGGCCACGCTT 2692488 Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| || || |||| || || || ||| ||||| ||||| ||||| || Sbjct 2692489 CTTGAGCCAGAAAATAGAGGCAAAGGCACCGCT---GAAGAAGATACCCTCAACGGCAGC 2692545 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 |||| | || || || | ||||| | | | ||| | | |||||| || || Sbjct 2692546 AAAGGCAACAAGACGTTGAGCAAATGAGGA---GTCCTTGTCCTGGATCCATCGAATGGC 2692602 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCT 794575 ||| || ||||| || | | | || | ||||| |||||| ||||||| || || Sbjct 2692603 CCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAATGGCGTTGAAGAGGTATGTTCT 2692662 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 | | | | || ||||||| ||||||||| ||||| || ||||| ||||| |||||||||| Sbjct 2692663 T-TGGGCAGGCTCCTTGATGTAGGTGTCAATGAGTAGGGAGTATGTCTCGGAGTGGATGT 2692721 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || ||||||||| || || ||||| Sbjct 2692722 TCTCCATCATGATCTGGAAACCGTAGAAGCA 2692752 Score = 104 bits (114), Expect = 4e-16 Identities = 180/258 (70%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | |||||| ||||||||||||||||||||| | || Sbjct 2692108 GACACCGGCCTTTTGGTAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCACCCAG 2692167 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| |||||| | ||| ||||| | | | ||| ||||||| ||||| Sbjct 2692168 AGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTAGCCTTGTACACCTTCTCGTTACCGAG 2692227 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 | | ||||| || || ||||| || || |||||||| ||||||| || |||||| Sbjct 2692228 AGCAACGAGCAGACGATCAGCGACAAACTCGATGTACTGCTTCATGAGGTTGGAGTTCAT 2692287 Query 794072 GCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 ||| | || || || ||| || | ||| | | ||||| | ||| || ||||| | Sbjct 2692288 GCCCAGAAGAGCACAAGGG-AGAGCCTCAGTAAGGAACTCCTGCTCAATGGTAACGGCAT 2692346 Query 794131 CGATGATGATCTGCCTGG 794148 || ||||||| | ||||| Sbjct 2692347 CGGTGATGATGT-CCTGG 2692363 Score = 91.5 bits (100), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || || |||| || ||||| || |||||||| |||| ||||| || Sbjct 3510919 CTGGTCGACATAACGAGCAGTGTTATTGAAGACACGTAGCATGGGAACAACACCGTTAGA 3510978 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | ||| | ||| || | ||| || ||||| Sbjct 3510979 AGTACCGTTGGTTCCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGAACGTTCAAGCC 3511038 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| ||| || || | || || | || || || |||||||| || || Sbjct 3511039 AATACCACCAGCCATCTTAGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCGTC 3511098 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| ||||||| || | || ||||| || || || || | | || || Sbjct 3511099 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGGGGTACC 3511158 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 || ||||| || ||||| Sbjct 3511159 AGCGTTGAATAGTGTGGG 3511176 >seq4 Length=8388633 Score = 138 bits (152), Expect = 2e-26 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| |||||||| |||||||| |||||| | || ||||||||||| |||||| Sbjct 1830168 GCCTCCAACTATCTCGACATTAAGCCCCTTCTCGATGTCGGATGCAAGACCGTTGCCAAC 1830109 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | ||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct 1830108 ATGATCAAGGGCAAGTCGCCAGAGGAGATCCGCAAGACCTTCAACATCA 1830060 Score = 95.1 bits (104), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || |||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 5238630 GTACTTGGTAACAGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 5238571 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | |||||| ||||| |||| Sbjct 5238570 GATGAGGCGGACAGAGGTCTGAATCTCTCGGG 5238539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916227146204459