Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3 122 6e-23 seq2 114 8e-21 seq1 102 5e-17 >seq3 Length=8783590 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| || ||||||||| ||||| ||||| ||| |||| |||| Sbjct 6944334 AGGACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 6944393 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| |||||||| | || | ||||||||||| Sbjct 6944394 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 6944453 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| || ||| Sbjct 6944454 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 6944513 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || ||||| |||||||| || || ||||||||||| Sbjct 6944514 TTCCCCGTAAGGGTCTTGACGAAAATCTGCATGAT 6944548 >seq2 Length=9166667 Score = 114 bits (126), Expect = 8e-21 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||| || || || ||||| || ||| | || | || Sbjct 2678457 AGGACGAGATGGAGGGTTGACTCCTTTTGGATATTGTAGTCGGAGAGGGTACGACCGTCC 2678516 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| |||| ||| |||||||| | || | || |||||||| Sbjct 2678517 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 2678576 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| ||| || ||| || |||| ||| || Sbjct 2678577 TGAATCTTGGACTTGAC--AT--TGTCGATAGTATCAGAGGACTCCACCTCAAGGGTGAT 2678632 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 |||||| || ||||||||||| || ||||| |||||||| Sbjct 2678633 GGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGAT 2678671 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| || || ||||| || ||| | || |||| Sbjct 2678229 AGAACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGAAAGGGTTCGGCCATCC 2678288 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| |||| ||| |||||||| | || | || ||||| || Sbjct 2678289 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTATCC 2678348 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | ||| || || | ||| |||||| Sbjct 2678349 TGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 2678408 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 2678409 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2678440 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||||||||| ||||| || ||| | || |||| Sbjct 2677947 AGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCC 2678006 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| |||||||| | || | || ||||| || Sbjct 2678007 TCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGAGGAATACCTTCCTTATCC 2678066 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | ||| || || | ||| |||||| Sbjct 2678067 TGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 2678126 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || || || |||||||| || Sbjct 2678127 TTGCCAGTAAGGGTCTTGAC 2678146 >seq1 Length=11790407 Score = 102 bits (112), Expect = 5e-17 Identities = 136/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| | || |||| || || ||||| || ||||| Sbjct 6428017 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAA 6427958 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| ||| || ||||| | || | ||||||||||| | || || ||||| | Sbjct 6427957 GATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--A 6427900 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| || || |||||| || | ||| |||||||| ||||| ||||||| Sbjct 6427899 T--TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCT 6427842 Query 34962 TTACAAA 34968 | || || Sbjct 6427841 TCACGAA 6427835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692081542039