Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-25 >seq1 Length=11790407 Score = 132 bits (146), Expect = 4e-25 Identities = 695/1098 (63%), Gaps = 11/1098 (1%) Strand=Plus/Minus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 || ||||| ||| || ||||| ||| || || ||| |||| | || || | Sbjct 3197849 TTGGTAATGACAATCTTGTTGGACTTGCCGGTGCCCTTCTCAACGGCGGAGACGTTCATG 3197790 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | ||| || || || ||||| || || || || | ||||||| Sbjct 3197789 ATACCGTTGGCATCAAGATCGAAGGTAACCTCAATCTGGGGAACACCACGGGGAGCAGGG 3197730 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | |||| | || || || || ||| | || ||| Sbjct 3197729 GGGATACCAGTAAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTGGTGCGCTGACGCTCA 3197670 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | |||||| || ||| || || || || | || | || || | Sbjct 3197669 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 3197610 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || ||||| | || | |||||||| ||||||||||| Sbjct 3197609 GACTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGCG 3197550 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| ||||| | |||||| | || | ||| | || | | || Sbjct 3197549 GTCTCAATACCGAGAGAGAGAGGGGCGACATCGAGGAGCAGAATCTCGTTGGTGGCCTTG 3197490 Query 281739 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | || | | |||| ||||| || || || | ||| ||||| || |||||||| ||| Sbjct 3197489 CTGGAGGTATCACCAGAGAGAATGGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCA 3197430 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 281857 || || || | | | || | | || || ||||| ||| | | || | ||| Sbjct 3197429 TCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGAAGTAATCGGTGATGAGCT-TCTG 3197371 Query 281858 -ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 || || ||||| | ||||| || || | || || || || || | || || || Sbjct 3197370 GACACGGGGGATACGGGTAGATCCACCGACGAGGACGATCTCGTGGACAAGGGACTTGTC 3197311 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 | || | || | || || ||||| | | | | || || | || Sbjct 3197310 GATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGATAGTGGATCGGAAGAGATCCTG 3197251 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 || || || ||||| ||| | || || || | || || ||||| || ||||| Sbjct 3197250 GCAGAGCTCCTCGAAACGAGCACGGGT--GATGGAGGTGTAGAAGTCAATACCCTCGAAG 3197193 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | ||| || | || || | || |||| ||||| || || | || || ||||||||| Sbjct 3197192 AGAGAGTCGATCTCGATGGAGGTCTGAGCGGAAGAGGAGAGAGTTCGCTTGGCACGTTCA 3197133 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTCAAATCTGTTTTATATTT 282153 || || || | || | || | || | | | || || || ||| |||||| || Sbjct 3197132 CAAGCGGTTCGGAGACGACGCAGAGCACGAACGTTAGTGCTT-AAGTCTTTTTTATGCTT 3197074 Query 282154 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 282213 | |||||| || | ||| | | || ||||| || || || |||||||| ||||| Sbjct 3197073 ACGCTTGAACTCGTTAACGAAGTGGTTAACCAGACGGTTGTCGAAGTCTTCACCACCCAA 3197014 Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 282273 | ||| | || | || | | || | ||| | || || |||| | | |||| Sbjct 3197013 GTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCCTCCTCAATGGTAAGGAGAGA 3196954 Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 |||||| ||| |||||||| | ||| || ||||| || || || || || Sbjct 3196953 AACATCGAAGGTACCACCACCAAGATCGAAGATAAGGACGTTGCGCTCACCCTCAACCTT 3196894 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 || || ||||| || |||| |||||||| || || || || || |||| | ||| || Sbjct 3196893 CTTGTCGAGACCGTAGGCAATGGCAGCAGCGGTAGGCTCGTTGATGATTCGGAGAACGTT 3196834 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||||| ||||| || ||||| || || || || | ||| || ||||| || || || Sbjct 3196833 GAGACCGGCAATGAGACCGGCATCCTTGGTAGCCTGACGTTGAGAGTCGTTGAAGTAGGC 3196774 Query 282454 AGGAACAGTAATAACGGC 282471 ||| ||||| | |||||| Sbjct 3196773 AGGGACAGTGACAACGGC 3196756 Score = 98.7 bits (108), Expect = 7e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| | |||| || |||||||| |||||||||||| | ||||||||| Sbjct 2913815 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 2913756 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||| | || || |||| | || || ||||| |||| || || Sbjct 2913755 ACTGTCATTACTGGTGATGCCAACCTTTCTCTACACGAGGTCGGTGTGCCTCGCAGCATC 2913696 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 || | | ||| |||| | ||| | ||| || Sbjct 2913695 GCCAGGACTCTCACTTATCCCGAGACTGTCAC 2913664 Score = 87.8 bits (96), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || ||||||||||| | ||||||||||| |||||| ||||| |||| || | || ||| Sbjct 2912372 GAGTTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTTATTGATACTGCGGTCAAGACT 2912313 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATT 435243 ||||| |||||||| ||||| || | | |||||| ||||| ||| || Sbjct 2912312 GCTGAAACTGGTTACATTCAGCGACGATTGGTCAAGGCCCTTGAGGATCTT 2912262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740621513664906