Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 104 5e-17 seq1 100 6e-16 seq3 91.5 3e-13 >seq2 Length=9166667 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || || || || ||||| ||||| || || || || ||| || Sbjct 2678226 CGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGAAAGGGTTCGGCCA 2678285 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| || || | || || || || ||||| || ||||||||| Sbjct 2678286 TCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTA 2678345 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| | || || || || || || ||| || || || || | || || Sbjct 2678346 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATG 2678405 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 2678406 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2678440 Score = 100 bits (110), Expect = 6e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || || || || ||||| || || || || || || ||| || Sbjct 2677944 CGAAGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCA 2678003 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| |||| || || || ||||| || ||||||||| Sbjct 2678004 TCCTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGAGGAATACCTTCCTTA 2678063 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| | || || || || || || ||| || || || || | || || Sbjct 2678064 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATG 2678123 Query 82776 GTCTTGCCTGTCAACGTCTTTAC 82798 |||||||| || | ||||| || Sbjct 2678124 GTCTTGCCAGTAAGGGTCTTGAC 2678146 >seq1 Length=11790407 Score = 100 bits (110), Expect = 6e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| | |||||||||||| || ||||| || || || || | Sbjct 6428054 TACCACCACGGAGACGGAGAACAAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 6427995 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| || || || || || || ||||| ||||| | || ||||| || || | Sbjct 6427994 AGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGGG 6427935 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || ||||| || || || || | || | Sbjct 6427934 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGA 6427875 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 | || | || || |||||||| |||| ||||| || || Sbjct 6427874 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6427835 >seq3 Length=8783590 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| |||||||| || ||||| || || || || || | | || Sbjct 6944331 CGGAGGACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 6944390 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| |||| || || || || || || || ||||| Sbjct 6944391 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 6944450 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| | || || || ||||| || || || || || || | || ||| Sbjct 6944451 TCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 6944510 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 ||||| || || | ||||| || || |||||||| || Sbjct 6944511 GTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCATGAT 6944548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824923081359