Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 129 6e-25 seq3 127 2e-24 seq1 105 6e-18 >seq2 Length=9166667 Score = 129 bits (142), Expect = 6e-25 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||| ||||| || || |||||||| ||| | || |||| |||||| ||| Sbjct 2678465 ATGGAGGGTTGACTCCTTTTGGATATTGTAGTCGGAGAGGGT--ACGACCGTCCTCAAGC 2678522 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| |||| | ||||||||||| ||||| |||||||||||||| ||| Sbjct 2678523 TGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATC 2678582 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | || || | || |||||| || | ||||| ||| |||||| Sbjct 2678583 TTGGACTTGACATTGTCGATAGTATCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCG 2678642 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| || |||||| Sbjct 2678643 GTGAGGGTCTTGACGAAGATTTGCATG 2678669 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| |||||||| ||| | || | | | ||||| |||||||||| Sbjct 2678243 GGTCGACTCCTTCTGGATATTGTAGTCGGAAAGGGTTCGGCCA-TCCTCAAGCTGCTTGC 2678301 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| ||||| || |||||||| || |||||| || Sbjct 2678302 CAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTGGACT 2678361 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | |||||| |||| ||||| ||| |||||||| || | Sbjct 2678362 TGACGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 2678421 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 2678422 TCTTGACGAAGATCTGCAT 2678440 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | || | | | ||||| |||||||||| Sbjct 2677961 GGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCA-TCCTCAAGCTGCTTGC 2678019 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||||||||| ||||| || |||||||| || |||||| || Sbjct 2678020 CAGCAAAGATGAGTCGCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTGGACT 2678079 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | |||||| |||| ||||| ||| ||||| || || | Sbjct 2678080 TGACGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGG 2678139 Query 133642 TTTTTACGA 133650 | || |||| Sbjct 2678140 TCTTGACGA 2678148 >seq3 Length=8783590 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| | | | |||||||||||||| || Sbjct 6944349 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTACC 6944407 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 6944408 AGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT 6944467 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||||| | |||||| || | ||||| || || || || || || Sbjct 6944468 GACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTAAGGGT 6944527 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||||||||||||| Sbjct 6944528 CTTGACGAAAATCTGCATG 6944546 >seq1 Length=11790407 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | || | | | ||||||||||||||||| Sbjct 6428022 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCGAGCTGCTTGCC 6427964 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||| ||||| || || ||||| |||||||| |||||| ||| Sbjct 6427963 AGCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT 6427904 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | || ||| || |||| ||||| ||| ||||| ||||| || Sbjct 6427903 GACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGT 6427844 Query 133643 TTTTACGAAA 133652 || |||||| Sbjct 6427843 CTTCACGAAA 6427834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419706260440