Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 196 6e-45 >seq3 Length=8783590 Score = 196 bits (216), Expect = 6e-45 Identities = 554/844 (66%), Gaps = 19/844 (2%) Strand=Plus/Plus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||||||||| |||||| | |||||| | || || || || | |||||| Sbjct 3510449 TTGCAAACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCGGTGCAAAGGTTGGAG 3510508 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 || ||| || || | ||||||||||| ||||| |||||| ||||||||||||| Sbjct 3510509 CTTCGAATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGC 3510568 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC 111429 ||| | || | || ||||| ||||| | | || || || | ||||| | || | | | Sbjct 3510569 ATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGGATGGCGTACCAAAGCTTCTGGGCC 3510628 Query 111430 -TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 111487 || || | | || | ||| | ||||| ||||||||| ||| || || |||||| Sbjct 3510629 TTGATAGACTTGC---GACCCTTACCCTCTCTCTCGTACTTCTCGTACAGAGCCTCAAAC 3510685 Query 111488 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 111547 || ||||| ||| | || || || || || || || | |||| ||||| Sbjct 3510686 TCGTCACCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCATTCG 3510745 Query 111548 CCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 111607 || | ||| || |||||||| ||||| || || ||||| || | || || || Sbjct 3510746 CCGTTCTTCTCGACACGCTTCATAAAAAGATCAGGGATCCAAAGAGCCAGGAACAGGTCA 3510805 Query 111608 CTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 111667 | | || ||||||| | ||| || || ||| | ||||||||||| | || ||| Sbjct 3510806 CGAGCGCGGACCTCTTCCTTACCGTGATTCTTTCGGAGATCAAGGAACTCGAAGACATCG 3510865 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGACGCCCAGCTTGA 111721 |||||||| |||||||| |||| |||| || || ||| | ||| | || Sbjct 3510866 GCGTGCCAAGGCTCAAGGTAGATAGCGAATGCACCAGGTCGCTTGTTA---CCACCCTGG 3510922 Query 111722 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 111781 | ||||| || || ||| || || || || ||||| |||| || ||| | || | Sbjct 3510923 TCGACATAACGAGCAGTGTTATTGAAGACACGTAGCATGGGAACAACACCGTTAGAAGTA 3510982 Query 111782 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 111841 || || || || || ||| | |||| | | || | || || |||||| Sbjct 3510983 CCGTTGGTTCCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGAACGTTCAAGCCAATA 3511042 Query 111842 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 111901 || |||||| ||| || || ||||| | | || || | |||||||||| || Sbjct 3511043 CCACCAGCCATCTTAGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCGTCAATG 3511102 Query 111902 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 111961 ||||||||| | | | ||||||||| ||||| ||| || || |||||||| Sbjct 3511103 CTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGGGGTACCAGCG 3511162 Query 111962 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 112019 ||||| || || || | || ||| ||| | | |||| |||||| || |||||||| Sbjct 3511163 TTGAATAGTGTGGGGGAAGCATGAGTGA--AGAACTTGCTGGACATGAGGTTGTATGTCT 3511220 Query 112020 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACT 112079 |||||||| ||| | || || || ||| || | || || ||||||| ||| | || Sbjct 3511221 CCAAGACACGATCGACATCGTCACCCCAGATACCAACAGCAACACGCATGATCATATGCT 3511280 Query 112080 GTGG 112083 | || Sbjct 3511281 GAGG 3511284 Score = 123 bits (136), Expect = 3e-23 Identities = 528/819 (64%), Gaps = 29/819 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| || ||||||||||| ||| | || ||||| ||||| Sbjct 2692124 TAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCACCCAGAGAGATGTTCTCCATG 2692183 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484 ||||| || || || | || || | | | | | | | |||| ||| Sbjct 2692184 AAGTCGAAGGGGTTTGTAGCCTTGTACACCTTCTCGTTACCGAGAGCAAC------GAGC 2692237 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | ||| |||| ||||||| ||| | |||||||| || | || Sbjct 2692238 AGACGATCAGCGACAAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCCAGAAGA 2692297 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 ||| ||||| || || | |||| | | |||||| ||| || || | | |||| Sbjct 2692298 GCACAAGGGAGAGCCTCAGTAAGGAACTCCTGCTCAATGGTAACGGCATCGGTGATGATG 2692357 Query 122605 GCGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 | ||||| | | | ||| ||| ||| | || | || ||| || |||| Sbjct 2692358 TCCTGGATCATCTGCTTGCTGGCACGTCCCTTAAGGTGAGAGTGGAGGAGG--CA-GGCA 2692414 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| |||||||| || || || || || || || |||||| ||||| ||| Sbjct 2692415 AAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGC 2692474 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 ||||| || |||||||| | ||| |||||| | || | ||| ||||||||||||| Sbjct 2692475 ATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCAAAGGCACCGCTGAAGAAGATACCC 2692534 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCA 122840 || || ||||| |||| ||| |||| || || ||| ||| | ||| | | | ||| Sbjct 2692535 TCAACGGCAGCAAAGGCAACAAGACGTTGAGCAAATGAG-GAGTCCTTGTCCTGGATCCA 2692593 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 | || ||||| | |||||||| || || || | ||| | ||||| | || | Sbjct 2692594 TCGAATGGCCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAATGGCGTTGAAGAG 2692653 Query 122901 CT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGC 122959 | |||||| | | ||||| ||||| ||||||| | | || ||||| ||| Sbjct 2692654 GTATGTTCTTTGGGCAGGC-TCCTTGATGTAGGTGTCAATGAGTAGGGAGTATGTCTCGG 2692712 Query 122960 CATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGA 123018 || | | | ||| ||| | || | ||||||| | || || ||| ||||| Sbjct 2692713 AGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGAATCTGG 2692771 Query 123019 ACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 123077 ||||| || | ||| | | | | ||||| || || ||||| || |||| || Sbjct 2692772 ACCTC-GCCACTGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAA 2692830 Query 123078 GAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTC 123134 ||| || ||||||| | ||| || |||| | || ||| || | |||||||| Sbjct 2692831 GAAAGCGAGGATGTGGGAGACGAAGAACTGCTCATCTGCAGTCAGACGGTTGTTCCAGTC 2692890 Query 123135 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 || ||||| ||||| | ||| | || || || ||||| Sbjct 2692891 GTGGAGATCCTTGGAAAGATCGATCTCCTCGGCTGTCCA 2692929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030579077600