Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 185 1e-41 seq4 95.1 1e-14 seq1 82.4 9e-11 >seq3 Length=8783590 Score = 185 bits (204), Expect = 1e-41 Identities = 958/1511 (63%), Gaps = 63/1511 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| ||||||| || || | ||||| || || || | ||| |||| Sbjct 3511284 CCTCAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGTGACGATGTCGATCGTGTC 3511225 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 |||||||||||| || |||||| |||| | | ||| ||| || | || || || | Sbjct 3511224 TTGGAGACATACAACCTCATGTCCAGCAAGTTCT--TCACTCATGCTTCCCCCACACTAT 3511167 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || || || ||||| ||||||||| | | | ||||||| Sbjct 3511166 TCAACGCTGGTACCCCTCAGCCTCAGCTGTCCTCATGCTTCCTTGTTGATATGAAGGAGG 3511107 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || |||||||||| | || || | | ||||| || || ||| ||||| Sbjct 3511106 ACAGCATTGACGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCTAAGATGGCTG 3511047 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | |||||||| || || | || | | |||| | ||| || || || | Sbjct 3511046 GTGGTATTGGCTTGAACGTTCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGAACCA 3510987 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | ||| || |||| ||||| || || || || ||| || || |||| Sbjct 3510986 ACGGTACTTCTAACGGTGTTGTTCCCATGCTACGTGTCTTCAATAACACTGCTCGTTATG 3510927 Query 104580 TAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| | ||| || || |||| |||| |||||||| |||| Sbjct 3510926 TCGACCAGGGTGG---TAACAAGCGACCTGGTGCATTCGCTATCTACCTTGAGCCTTGGC 3510870 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCG 104691 |||| ||| || | ||||||||||| | || || || ||| | || |||| |||| Sbjct 3510869 ACGCCGATGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAAGAGGTCCGCG 3510810 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 | || || || ||| ||||| ||||| || ||||| || |||||| | || ||| | Sbjct 3510809 CT--CGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTTATGAAGCGTGTCGAGAA 3510752 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || ||| | ||| ||||| | || || || || ||||| || | || | || Sbjct 3510751 GAACGGCGAATGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCTGACTGCTACGG 3510692 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 ||| |||||||| || || ||| ||||||||| ||| ||| || | | || | | Sbjct 3510691 TGACGAGTTTGAGGCTCTGTACGAGAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGTCT 3510634 Query 104872 -GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | || | || | | ||| | || || || || | || || ||||| || | || Sbjct 3510633 ATCAAGGCCCAGAAGCTTTGGTACGCCATCCTTGAGGCCCAGACAGAGACCGGAAACCCT 3510574 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||| ||||| || ||| |||| ||||| || |||||||| | ||| || Sbjct 3510573 TTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTTGGTACCATT 3510514 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || ||||| || || || || ||| | || | | | |||||| ||||| Sbjct 3510513 CGAAGCTCCAACCTTTGCACCGAGATCATTGAGTACTGCGCCCCTGATGAGGTTGCTGTT 3510454 Query 105050 TGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGAT-CCAGAGACAAA 105099 || ||||| || || | |||| || || |||| ||| | | || Sbjct 3510453 TGCAACCTTGCCTCCTTGTCTCTGCCTTCTTTCATTAATTATGAAGATGCTTGTTAC--- 3510397 Query 105100 GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAG 105159 ||| || | | || || ||||| || || || || | ||| | |||| Sbjct 3510396 GAC--TTCA-----AGAAGCTTCACGATGTCACTCAAGTCGTTGTCCGCAACTTGAACAA 3510344 Query 105160 AGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCG 105219 |||| ||| ||| ||||| || | ||||| || || ||| | ||||| Sbjct 3510343 GATTATCGATGTAAACCACTACCCTGTGCAAGAAGCTCGCAACAGCAACATGCGTCACCG 3510284 Query 105220 TCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG---TCGCCACG- 105275 || |||||||| |||||||| |||||||| |||| | ||| ||| || || | Sbjct 3510283 ACCCATTGGTCTTGGTGTTCAAGGTCTCGCTGATG----CCTTCCTTGCACTCCGCATGC 3510228 Query 105276 CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335 | ||||| || || || || | || || || || |||||||| || |||| Sbjct 3510227 CCTTTGAGTCTCCTGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCACG 3510168 Query 105336 CCGCTCTTGAGGCGAGTTCAG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 105392 | |||||| | | || | || | || ||| || || || || || || Sbjct 3510167 CTGCTCTT---ACCACCTCTGTGCAGCTCGCCAAGGAGGAGGGCCCCTACTCCACTTTCA 3510111 Query 105393 AGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---- 105448 |||| ||||| || || | || | || || ||||| |||| |||| || | ||| Sbjct 3510110 AGGGCTCTCCTGCCTCGGAGGGTATTCTCCAGTTTGACATGT-GGAATGTCAAACCCTCT 3510052 Query 105449 AAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 105508 | ||| | ||||||||| | ||| ||| | ||| | | ||| | || ||| Sbjct 3510051 GACCTT---TGGGACTGGGAATCCCTCCGGGAGGATGTTAAGACGCACGGTATCCGCAAC 3509995 Query 105509 AGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 105568 ||||| ||| | ||||| ||||| || ||| ||| | || || | || || || || Sbjct 3509994 AGTCTACTCGTTGCTCCTATGCCTACTGCCAGCACGTCGCAGATTCTTGGCAACAACGAG 3509935 Query 105569 TGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTG 105628 ||||| || |||||||| | |||||||| | | || ||| || || || || | Sbjct 3509934 TGCTTCGAGCCCTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAATTCCAG 3509875 Query 105629 ATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG 105688 |||||||| || || | || || || || ||||| |||||| | | |||| Sbjct 3509874 GTTGTCAACCCCTGGCTTCTGAAGGATCTTGTCGACATGGGTCTTTGGTCCGATGCTATG 3509815 Query 105689 AAGGATCTCAT 105699 ||| | | ||| Sbjct 3509814 AAGAACCGCAT 3509804 Score = 145 bits (160), Expect = 9e-30 Identities = 216/301 (72%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 94657 GAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCT 94715 ||||||||| |||||| |||| || || ||||| ||| | ||||| | || Sbjct 2692710 GAGACATACTCCCTACTCATTGACACCTACATCAAGGAGCCTGCCCA-AAGAACATACCT 2692652 Query 94716 CTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTG 94775 ||| | ||||| | || |||| || || | |||||| || || ||||| || || Sbjct 2692651 CTTCAACGCCATTGACACTATTCCTTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATG 2692592 Query 94776 GTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGG 94834 | | | |||| | | | | | |||||| | || || | || ||||| ||||||| Sbjct 2692591 GATCCAGGACAAGGACTCCT-CATTTGCTCAACGTCTTGTTGCCTTTGCTGCCGTTGAGG 2692533 Query 94835 GTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGC 94894 ||||||||||| ||| |||| | |||||| |||||||||||||| || ||||||| Sbjct 2692532 GTATCTTCTTCAGCGGTGCCTTTGCCTCTATTTTCTGGCTCAAGAAGCGTGGCCTCATGC 2692473 Query 94895 CAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTG 94954 | ||||| ||||||||||||||| ||||||||||||||||| || ||| || |||| Sbjct 2692472 CTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTG 2692413 Query 94955 C 94955 | Sbjct 2692412 C 2692412 >seq4 Length=8388633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| |||||||| || ||||||| ||| || || || | ||| | | |||| || Sbjct 1453286 GGCGTCAATCTCGTCGATGAAGATGATACAGGGAGCGTTCTTGCGGCCCTCGGCAAACAG 1453345 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9821 || ||||||||| | || ||||||||||||||||| || || | | | || || Sbjct 1453346 GTCTCGTACACGCGAAGGTCCAACACCAACAAACATCTCAACGAATTCGGAGCCGCTCAC 1453405 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| || || ||| ||||| || |||| ||| || | |||||||| | Sbjct 1453406 ACT-GAAGAAAGGCACTCCAGACTCACCAGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 1453464 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||| || || || | || |||||||||||| |||||||| || Sbjct 1453465 TACCGGGGGGTCCAGCCAAGATGGCACCTCGTGGGATCTTGGCACC 1453510 >seq1 Length=11790407 Score = 82.4 bits (90), Expect = 9e-11 Identities = 206/301 (68%), Gaps = 14/301 (5%) Strand=Plus/Minus Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATG-CATGG---TTGATTTTCGCGAGCGA 9752 ||| | ||| |||| ||||| || ||||| ||| || || ||| | || ||| || | Sbjct 4966654 TCCAATGGCGTCAAGTTCATCGATAAAGACAATGGCAGGGGACTTGTTCTTGGCG-GC-A 4966597 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | |||||| || || || |||||||| || ||||||||||| ||||| | || | Sbjct 4966596 GT--AAAGAGTTCGCGGACTCGCTTGGCACCAACACCAACAAAAATCTCGTCGAA-CTCA 4966540 Query 9813 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 | | |||| | || ||| || ||| | ||| || |||| |||||| || ||||| Sbjct 4966539 CTACCAGACATATAGAAGAAAGGAACACCGGCTTCGCCGGCAACGGCTCGAGCAAGAAGC 4966480 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACT 9930 |||||||| ||||| || || |||||||| | || |||| ||||| || | Sbjct 4966479 GTCTTACCAGTACCGGGAGGGCCAACGAGGAGGACGCCCTTGGGAAGTTTGGCACCGAGG 4966420 Query 9931 TC-CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGG 9989 || | || | ||||||| | ||| | ||| || || | ||| | | ||| || |||| Sbjct 4966419 TCGCTAA--ACTTCTCAGGGTTCTTCAAAAACTCGACGACTTCCTGGAGTTCTTCCTTGG 4966362 Query 9990 C 9990 | Sbjct 4966361 C 4966361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259480372440