Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 192 2e-43 seq2 141 3e-28 seq3 118 3e-21 >seq1 Length=11790407 Score = 192 bits (212), Expect = 2e-43 Identities = 699/1081 (65%), Gaps = 25/1081 (2%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 3196411 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 3196470 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || || | || || || | || || Sbjct 3196471 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 3196530 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | ||||| | |||| || || Sbjct 3196531 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGG--TC----CAG 3196584 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | ||| | || || || ||||| || | || | | ||| || | || || | || Sbjct 3196585 GCCGATATGAAGCACTTCCCTTTCACAATCGT-CGACAAG--GGCGGCAAGCCCAACATC 3196641 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGT 349554 |||||||| | || ||||| || || | || ||| || || || || | ||| | Sbjct 3196642 GAGGTTGAGTTCAAGGGTGAG-AAGAAGACCTTCACCCCTGAGGAGATCTCCGCTATGAT 3196700 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||| || | |||||| | || | || || || || | | || || Sbjct 3196701 CCTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGCGAGACTGTCAACAACGCCGT 3196760 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | | ||||| || ||||| || || || | || ||| || || || ||||| || Sbjct 3196761 TGTCACTGTCCCTGCCTACTTCAACGACTCTCAACGTCAGGCTACCAAGGATGCCGGTCT 3196820 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || | || ||||| |||| || || || || || ||||| || ||||| || Sbjct 3196821 CATTGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCTGCCATTGCCTA 3196880 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | | ||| || || | ||||| || ||| | |||||||| Sbjct 3196881 CGGTCTCGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTTATCTTCGATCTTGGTGGTGG 3196940 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 3196941 TACCTTCGATGTTTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGC 3197000 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 ||||| || || | ||||| ||||| || || || ||||| ||| || || ||||| Sbjct 3197001 CGGTGACACTCACTTGGGTGGTGAAGACTTCGACAACCGTCTGGTTAACCACTTCGTTAA 3197060 Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCC 349973 || || |||||| |||| ||||| || | | ||| | | || ||||||| | Sbjct 3197061 CGAGTTCAAGCGT-AAGCATAAAAAAGACTTAAGCACTAACGTTCGTGCTCTGCGTCGTC 3197119 Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTG 350033 | |||| || ||||||||||| ||||| | | || ||| | | || ||||| || | Sbjct 3197120 TCCGAACCGCTTGTGAACGTGCCAAGCGAACTCTCTCCTCTTCCGCTCAGACCTCCATCG 3197179 Query 350034 AAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTG 350093 | || || ||||| || || | || |||| | || || || |||||||| || | Sbjct 3197180 AGATCGACTCTCTCTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGTTTCG 3197239 Query 350094 AAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAG 350153 | || | || |||||| || || | || || | || || || || | | | Sbjct 3197240 AGGAGCTCTGCCAGGATCTCTTCCGATCCACTATCCAGCCCGTCGACCGTGTCCTTACCG 3197299 Query 350154 ATGCAAAAATGTCCAAAAATCAGATTG---ATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 | || || | || | || || ||| | || | || | || ||||| ||||| | Sbjct 3197300 ACGCCAAGA--TCGACAAGTC-CCTTGTCCACGAGATCGTCCTCGTCGGTGGATCTACCC 3197356 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGAT 350270 |||| || || || || | | | || | || || || || || || | | Sbjct 3197357 GTATCCCCCGTGTCCAGAAGCTCATCACCGATTACTTCAACGGAAAGGAGCCCAACAAGT 3197416 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTG 350330 | || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | |||| Sbjct 3197417 CCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCCATTCTCTCTG 3197476 Query 350331 G 350331 | Sbjct 3197477 G 3197477 Score = 109 bits (120), Expect = 2e-18 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 378222 TCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACG 378281 |||||| ||| |||||||||| | ||| || || ||||||||||| | ||| | || Sbjct 2912286 TCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATAAGACCTTCTCG 2912345 Query 378282 ACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTC 378341 |||| |||| || |||||||| || || ||||||| || |||| || | || |||| Sbjct 2912346 ACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGAGTGAGACCACGAAGGTAAGAGTTCTC 2912405 Query 378342 AATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATT 378401 || || || | || | || || | ||||| || || | ||||| | ||||||| Sbjct 2912406 AACGAAACCACGAGCTTCCGGAGAGTAATCATCCTTGGTGAAGTGAGGAAGGGTACGATA 2912465 Query 378402 CTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446 || || || | ||||| || ||||| || ||| | || ||||| Sbjct 2912466 CTTGAAACCGAAAGGAATGCGCTTTCCTTCGACAATTTGCTGACC 2912510 Score = 107 bits (118), Expect = 6e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | |||||||| || ||||||||||| || || || || || || Sbjct 6428055 ATACCACCACGGAGACGGAGAACAAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCG 6427996 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | ||||| ||||| || || || || ||||| ||||| | || || || || || Sbjct 6427995 GAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGG 6427936 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || ||||| || || | || ||||| || || | || || | || Sbjct 6427935 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCG 6427876 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || || | ||||| || || || || || || ||| Sbjct 6427875 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 6427834 Score = 96.9 bits (106), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | |||||||| || |||||||| || Sbjct 2911504 CGAGGCACACCCAGGGTGACGTTC---TTGGAAGAGACACCAGCGAAATGGAAAGTGTTC 2911560 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||| | ||||||||||| ||||| || || | ||| ||||||||||| Sbjct 2911561 AGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACACCAACCATTTCG 2911620 Query 377578 CCAGGATTGACAATAGC 377594 ||||| ||||||| ||| Sbjct 2911621 CCAGGGTTGACAAAAGC 2911637 >seq2 Length=9166667 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | |||||||| || || || ||||| || || ||||| || || Sbjct 2678210 CATACCACCACGAAGGCGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTC 2678269 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| ||||| || || ||||| || || | || ||||| ||||| Sbjct 2678270 GGAAAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGG 2678329 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| |||||||| || || | || || || || || | ||||| | || Sbjct 2678330 AGGAATACCTTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTC 2678389 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 2678390 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2678440 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || || ||||| ||||| ||||| || || Sbjct 2678438 CATACCACCACGAAGGCGGAGGACGAGATGGAGGGTTGACTCCTTTTGGATATTGTAGTC 2678497 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || || || || || | || ||||| ||||| Sbjct 2678498 GGAGAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGG 2678557 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || |||||||| || | || ||||| || || | |||||| | || Sbjct 2678558 AGGAATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGAGGACTC 2678617 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || || || || || ||||| Sbjct 2678618 CACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 2678668 Score = 127 bits (140), Expect = 6e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 |||||||| || || || ||||| || ||||| || || || || | ||||| ||||| Sbjct 2677947 AGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCC 2678006 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || ||||||||||| || || ||||| ||||||||||| ||||| |||||| Sbjct 2678007 TCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGAGGAATACCTTCCTTATCC 2678066 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || || || || || | ||||| | || || || || || | ||| Sbjct 2678067 TGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 2678126 Query 140706 TTTCCGGTTAGTGTTTTTAC 140725 || || || || || || || Sbjct 2678127 TTGCCAGTAAGGGTCTTGAC 2678146 >seq3 Length=8783590 Score = 118 bits (130), Expect = 3e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || |||||||||||||| || || || || || || Sbjct 6944318 ACCACCACGGAGGCGGAGGACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 6944377 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || || ||||| || || || Sbjct 6944378 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 6944437 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || ||||| | || || | || || Sbjct 6944438 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 6944497 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 6944498 CTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 6944545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250886030343