Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 260 2e-64 seq4 140 4e-28 >seq3 Length=8783590 Score = 260 bits (288), Expect = 2e-64 Identities = 522/768 (68%), Gaps = 18/768 (2%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| || | ||||||| || || | |||||| |||||||| | |||||| Sbjct 3511284 CCTCAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGTGACGATGTCGATCGTGTC 3511225 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||| ||| || | ||| | |||| ||| || || || | || || || ||| Sbjct 3511224 TTGGAGACATACAACCTCATGTCCAGCAAGTTCTTCACTCATGCTTCCCCCACACTATTC 3511165 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||||||||| ||| |||||| |||| |||||||| || | |||||||| ||| Sbjct 3511164 AACGCTGGTACCCCTCAGCCTCAGCTGTCCTCATGCTTCCTTGTTGATATGAAGGAGGAC 3511105 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || ||||| |||||||| || |||||| |||||| || || ||| | | ||| Sbjct 3511104 AGCATTGACGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCTAAGATGGCTGGT 3511045 Query 53420 GGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||| || | || | || | || ||||||| | ||| | ||| || || | Sbjct 3511044 GGTATTGGCTTGAAC-GTTC-ACCGAATCCGTGCCACTGGCTCTTACATCGCCGGAACCA 3510987 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 |||| | | || | || || ||||| || |||||||| ||||| || || || | Sbjct 3510986 ACGGTACTTCTAACGGTGTTGTTCCCATGCTACGTGTCTTCAATAACACTGCTCGTTATG 3510927 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || ||||||||||| ||||| || | ||||| |||||||| ||||| ||||||| Sbjct 3510926 TCGACCAGGGTGGTAACAAGCGACCTGGTGCATTCGCTATCTACCTTGAGCCTTGGCACG 3510867 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 |||| | | ||||| || || || || |||||| ||| | |||||| | ||| | Sbjct 3510866 CCGATGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAAGAGGTCCGCGCTC 3510807 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 |||||||||| ||||| ||||| || || || || ||| | || |||||| ||| Sbjct 3510806 GTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTTATGAAGCGTGTCGAGAAGAACG 3510747 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAG 53776 || ||| || |||||||| ||||||||||| ||||| | | || ||||||||| Sbjct 3510746 GCGAATGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCTGACTG-CTACGGTGAC 3510688 Query 53777 GAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAG 53830 |||||| | | |||| || |||| | | | |||| ||| ||| Sbjct 3510687 GAGTTTGAGGCTCTGTACGAGAAGTACGAGAGAGAGGGTAAGGGTCGC------AAGTCT 3510634 Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCG 53890 ||||||| | || | ||| | || ||||| || |||| ||||| |||| || Sbjct 3510633 ATCAAGGCCCAGAAGCTTTGGTACGCCATCCTTGAGGCCCAGACAGAGACCGGAAACCCT 3510574 Query 53891 TACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | |||| |||||||||| |||| ||||||||||| |||||| Sbjct 3510573 TTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAAC 3510526 >seq4 Length=8388633 Score = 140 bits (154), Expect = 4e-28 Identities = 193/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 |||||||| | ||||||| || |||||||| ||||| ||||| || | |||||| Sbjct 5420351 CGAGTGAACGTATAACGAGGACTAGCAGCATCAGAACCACCTGCAAGCCGAGAACCGAAG 5420292 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 | |||||| || |||| | ||| | |||||||| ||||| ||||| ||||| | Sbjct 5420291 TTTCCACTAGGTTCCAGGCAGTTGATGTTGTTGGAACCCACGAAGTTCTGAGCAAGACCA 5420232 Query 117422 ACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAG 117481 | || || ||| || | ||||| ||||| || |||||||| || | ||| || Sbjct 5420231 ATGATGGTTTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCAGACACATAA 5420172 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATC 117541 || |||| | | | |||||| ||||| ||| ||| |||||| ||| || || ||| Sbjct 5420171 CCTGCCAATTCAACAACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCATGCGTAGATC 5420112 Query 117542 ACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 ||||||||||||| ||||| | |||||| Sbjct 5420111 ACCTTGCGCTGACCGGGCTTAAATCCATCC 5420082 Score = 114 bits (126), Expect = 1e-20 Identities = 207/303 (68%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| || ||||| | || || | || || ||||| |||||||| ||||| | || Sbjct 5420355 CAATCGAGTGAACGTATAACGAGGACTAGCAGCATCAGAACCACCTGCAAGCCGAGAACC 5420296 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || | |||| || || ||| ||||| |||||||| |||||||| |||||||| | Sbjct 5420295 GAAGTTTCCACTAGGTTCCAGGCAGTTGATGTTGTTGGAACCCACGAAGTTCTGAGCAAG 5420236 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 | | || || || || | |||||||||||| || |||||||| || | | Sbjct 5420235 ACCAATGATGGTTTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCAGACAC 5420176 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 || || ||||| | | |||||| |||| | ||| ||| |||||| || ||||| Sbjct 5420175 ATAACCTGCCAATTCAACAACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCATGCGTA 5420116 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGAT 152321 |||||||||||||| || || || || |||| || ||||| || ||| || | Sbjct 5420115 GATCACCTTGCGCTGACCGGGCTTAAATCCATCCAGAACAGATGGAATAGATCGCATGTT 5420056 Query 152322 GTC 152324 ||| Sbjct 5420055 GTC 5420053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214761923800