Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 264 1e-65 seq2 199 5e-46 seq1 141 1e-28 seq4 113 5e-20 >seq3 Length=8783590 Score = 264 bits (292), Expect = 1e-65 Identities = 904/1386 (65%), Gaps = 50/1386 (4%) Strand=Plus/Plus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| ||||| || ||||||||| || || ||||| | |||||| || || ||||| Sbjct 3509918 GTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGACGTGCTGGCAGTAGGCATA 3509977 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCA---AATCT 80511 || | || | || || || | |||||| |||| | |||||| || | | || Sbjct 3509978 GGAGCAACGAGTAGACTGTTGCGGATACCGTGCGTCTTAACATCCTCCCGGAGGGATTCC 3510037 Query 80512 GA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCT 80566 | ||||| ||| | | | |||| ||||||||| ||| | || |||| Sbjct 3510038 CAGTCCCAAAGGTCAG-----AGGGTTTGACATTCCACATGTCAAACTGGAGAATACCCT 3510092 Query 80567 CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACAC 80625 |||| || ||||| ||| ||| || ||| ||||||||| |||||| |||| |||| Sbjct 3510093 CCGAGGCAGGAGAGCCCTTGAAAGTGGAGTAGGGGCCCTCCTCCTTGGCGAGCTGCACA- 3510151 Query 80626 GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCC 80685 || |||| || ||||| || ||| ||| |||| |||||||| | || ||| Sbjct 3510152 GAGGTGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGAGCC 3510211 Query 80686 TGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCG 80745 | || || || | || || | | ||| | ||||| || || ||||| || Sbjct 3510212 TCAGGAGACTCAAAGGGCATGCGGAGTGCAAGGAAGGCATCAGCGAGACCTTGAACACCA 3510271 Query 80746 ATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTT 80804 | | || || ||||| ||| |||| | | || || || | | ||||| ||| Sbjct 3510272 AGACCAATGGGTCGGTGACGCATGTT-GCTGTTGCGAGCTTCTTGCACAGGGTAGTGGTT 3510330 Query 80805 ATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTG 80864 |||||| | ||||| |||||| ||| || | || ||||| ||||| |||| Sbjct 3510331 TACATCGATAATCTTGTTCAAGTTGCGGACAACGACTTGAGTGACATCGTGAAGCTTCTT 3510390 Query 80865 AAAGTCG-AATTGGTTCCCCTTCACAA---ATGCCGGAAGGCTCAG----GGACGCCAGA 80916 |||||| || | | ||||| || ||| |||||| || ||| || || Sbjct 3510391 GAAGTCGTAACAAG--CATCTTCATAATTAATGAAAGAAGGCAGAGACAAGGAGGCAAGG 3510448 Query 80917 TTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAA 80976 ||||| || || ||||| |||| | |||| | ||| || ||||| | || || Sbjct 3510449 TTGCAAACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCGGTGCAAAGGTTGGAG 3510508 Query 80977 GACTT--AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGC 81034 ||| ||| ||||| ||||| || ||||| |||| |||||| ||||||||| Sbjct 3510509 --CTTCGAATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGA 3510566 Query 81035 ACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCG 81094 |||| | ||| | |||||||| ||| | || |||||||||| ||||| || | | Sbjct 3510567 GCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGGATGGCGTACCAAAGCTTCTGGG 3510626 Query 81095 CCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACT 81154 |||||| |||||| || || || | | ||||| |||| | || |||| Sbjct 3510627 CCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTACAGAGCCTCAAACT 3510686 Query 81155 TGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCG 81213 | |||||| | ||| ||| ||| | ||||||||||| |||||||| || ||| ||| Sbjct 3510687 CGTCACCGTAGCAGT-CAGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCATTCG 3510745 Query 81214 GTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCG 81273 || ||||| ||| |||||| ||| ||||||||||| || || ||||||||| Sbjct 3510746 CCGTTCTTCTCGACACGCTTCATAAAAAGATCAGGGATCCAAAGAGCCAGGAACAGGTCA 3510805 Query 81274 CGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGT 81331 || |||||| |||| || | ||| || || || | || || || || | || | Sbjct 3510806 CG--AGCGCGGACCTCTTCCTTACCGTGATTCTTTCGGAGATCAAGGAACTCGAAGACAT 3510863 Query 81332 CCGCATGCCATGGCTCCAGATACACGGCG-ATCGAC-----CCCTTGCGACGGCCACCCT 81385 | || ||||| ||||| || || | ||| || || | |||| | ||||||| Sbjct 3510864 CGGCGTGCCAAGGCTCAAGGTAGATAGCGAATGCACCAGGTCGCTTGTTA---CCACCCT 3510920 Query 81386 GGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACT 81445 ||| ||| ||||| ||||| || || ||||| | ||| || | | ||| | || Sbjct 3510921 GGTCGACATAACGAGCAGTGTTATTGAAGACACGTAGCATGGGAACAACACCGTTAGAAG 3510980 Query 81446 GACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA--TTGAAAGACC 81503 |||||| || || |||| || || |||| || | | | ||| | ||| || Sbjct 3510981 TACCGTTGGTTCCGGCGATGTAAGAGCCAGTGGCACGGA-TTCGGTGAACGTTCAAG-CC 3511038 Query 81504 GATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTC 81563 || ||||| | | ||| |||||| ||||| || | ||| || || || || || Sbjct 3511039 AATACCACCAGCCATCTTAGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCGTC 3511098 Query 81564 GATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCC 81623 ||||| || | ||||| |||| | ||| || |||| |||||| | || Sbjct 3511099 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGGGGTACC 3511158 Query 81624 GGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGT 81683 || ||||| ||||| |||| || ||| |||| | | | ||||| |||| || || Sbjct 3511159 AGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTGGACATGAGGTTGTATGT 3511218 Query 81684 TTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTA 81743 ||| ||| || | ||||||||| ||||| | ||| |||||||| | ||| | Sbjct 3511219 CTCCAAGACACGATCGACATCGTCACCCCAGATACCAACAGCAACACGCATGATCATATG 3511278 Query 81744 CTGGGG 81749 ||| || Sbjct 3511279 CTGAGG 3511284 Score = 179 bits (198), Expect = 4e-40 Identities = 180/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || |||||||| ||||| || ||||| || || |||||||| ||||| Sbjct 6944548 ATCATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 6944489 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| || | ||| | || || |||||||||||||| ||||| || ||| Sbjct 6944488 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 6944429 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTA 27581 |||||||| || || |||||||||||||| |||||||||| || ||||| ||| ||||| Sbjct 6944428 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTA 6944370 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || |||||||| || ||| | || || || ||||| Sbjct 6944369 CAACATCCAGAAGGAGTCTACTCTTCACCTGGTCCTCCGCCTCCGTGGTGG 6944319 Score = 116 bits (128), Expect = 4e-21 Identities = 335/508 (66%), Gaps = 17/508 (3%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGGG-TCGTCGTTTGGTCAGCGT 64719 || |||||||| |||||||| || ||||| | | || || || |||| ||| ||| Sbjct 2692617 AAGAAGGCTGACTGGGCCATTCGATGGATCCAGGACAAGGACTCCTCATTTGCTCAACGT 2692558 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || ||||| || || || || ||||| || | || ||||||||| Sbjct 2692557 CTTGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATTTTC 2692498 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| ||||| ||||| |||||| | || || |||||||| |||||||| Sbjct 2692497 TGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 2692438 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAA-GGACAAACC 64898 |||||||| || ||| || ||||| ||| | ||||| || |||| || Sbjct 2692437 GACGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTTAAGGGACGTGCC 2692378 Query 64899 ATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCAT 64958 | || | || || || || | | || || ||||| |||| ||| | Sbjct 2692377 AGCA-AGCAGATGATCCAGGACATCATCACCGATGCCGTTACCATTGAGCAGGAGTTCCT 2692319 Query 64959 TACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATAT 65018 ||||| || || || ||| ||| | |||||| | || | ||||| ||||| || Sbjct 2692318 TACTGAGGCTCTCCCTTGTGCTCTTCTGGGCATGAACTCCAACCTCATGAAGCAGTACAT 2692259 Query 65019 CGAATTTGTAGCAGATCGCCTGC---TTACTCAGTTTGGTA---TTAAGCCCTACTGGAA 65072 ||| ||||| || ||||| |||| || ||| | |||| ||| ||| || Sbjct 2692258 CGAGTTTGTCGCTGATCGTCTGCTCGTTGCTC---TCGGTAACGAGAAGGTGTAC---AA 2692205 Query 65073 TTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTT 65132 || |||| || || |||| ||||||| ||| |||| || ||||| |||||||| Sbjct 2692204 GGCTACAAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGTGGCAAGACCAACTTTTT 2692145 Query 65133 TGAAAAGAGGGTAGGTGATTACTCAAAG 65160 || ||| | || | || ||| |||| Sbjct 2692144 CGAGAAGCGCGTTGCCGACTACCAAAAG 2692117 >seq2 Length=9166667 Score = 199 bits (220), Expect = 5e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| |||||||| || ||||||||||| || || |||||||| ||||| Sbjct 2678671 ATCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCC 2678612 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||||| || | ||| | ||| | || |||||||||||||| || |||||||| ||| Sbjct 2678611 TCTGATACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGAC 2678552 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | ||||| || || ||||| || ||||| | ||||||||| | ||||| Sbjct 2678551 CAGCAGCGATTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTCTCCGACTAC 2678492 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| |||||||||| || || || ||||| ||| | || ||||| ||||| Sbjct 2678491 AATATCCAAAAGGAGTCAACCCTCCATCTCGTCCTCCGCCTTCGTGGTGG 2678442 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| | Sbjct 2678440 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCT 2678381 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || ||||| ||||| || |||||||| |||||| Sbjct 2678380 GACACCATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAG 2678321 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||| ||||| ||||| || ||||||| || ||||| | ||||| ||| Sbjct 2678320 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTTCCGACTACAAT 2678261 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || ||||| ||||| Sbjct 2678260 ATCCAGAAGGAGTCGACCCTCCACCTTGTTCTTCGCCTTCGTGGTGG 2678214 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| ||||| |||||||| || || || ||||| ||||| ||| | ||| | Sbjct 2678146 GTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGACACCATCGAC 2678087 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || ||||| ||||| || |||||||| ||||||||||| || || Sbjct 2678086 AACGTCAAGTCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAGCAGCGACTCATC 2678027 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||||| || ||||| | ||||| || | || ||||| Sbjct 2678026 TTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTTCCGACTACAACATTCAGAAGGAG 2677967 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || || || || || || | || || || ||||| || Sbjct 2677966 TCAACCCTCCACCTTGTTCTTCGCCTCCGAGGTGGCCA 2677929 >seq1 Length=11790407 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 6427835 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 6427894 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| | Sbjct 6427895 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGATTG 6427954 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| |||||||||| || ||||| | ||||| || |||| ||| Sbjct 6427955 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 6428014 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| || || || | ||||| || ||||| Sbjct 6428015 GAGTCTACTCTGCACCTTGTTCTCCGTCTCCGTGGTGG 6428052 >seq4 Length=8388633 Score = 113 bits (124), Expect = 5e-20 Identities = 221/327 (68%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| || |||||| || ||| || | ||||| |||||||||||||| || Sbjct 5420058 CATGCGATCTATTCCATCTGTTCTGGATGGATTTAAGCCCGGTCAGCGCAAGGTGATCTA 5420117 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 ||| ||| |||||| ||| || | |||| |||||| | | || | || || || Sbjct 5420118 CGCATGCTTCAAGAGAAACTTGATCAAAGACAAGAAGGTTGTTGAATTGGCAGGTTATGT 5420177 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 | | || || ||||| || |||||||| || ||| || || ||||| | || Sbjct 5420178 GTCTGAACAGACGGCATACCACCACGGTGAACAGTCACTTCAACAAACCATCATTGGTCT 5420237 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 |||||||||||| || ||| | || ||| | |||| || || || |||| | || || Sbjct 5420238 TGCTCAGAACTTCGTGGGTTCCAACAACATCAACTGCCTGGAACCTAGTGGAAACTTCGG 5420297 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGC 32258 | ||||| || ||||| |||||||| || | ||||| | ||||| || | | Sbjct 5420298 TTCTCGGCTTGCAGGTGGTTCTGATGCTGCTAGTCCTCGTTATACGTTCACTCGATTGTC 5420357 Query 32259 ACCTTCGACGCGCAAGATTTTCGACCC 32285 ||||| | ||||| || ||| |||| Sbjct 5420358 ACCTTTTGCCCGCAAAATCTTCCACCC 5420384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309109672720