Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 120 7e-22 seq1 113 1e-19 >seq3 Length=8783590 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || |||||||||||||| || ||||||||||| ||| | || | Sbjct 6944327 GAGGCGGAGGACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCG 6944386 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || |||||||| | ||||||||||| | || || || Sbjct 6944387 GCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTC 6944446 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 6944447 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGT 6944506 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || ||||| ||||| | |||||| Sbjct 6944507 GATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 6944545 Score = 96.9 bits (106), Expect = 8e-15 Identities = 190/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 115639 TTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTCTTTT 115698 |||||| ||||||||||||||||||| ||| || ||||| |||| ||| | | Sbjct 3510788 TTTGGATCCCTGATCTTTTTATGAAGCGTGTCGAGAAGAACGGCGAATGGACTCTCATGT 3510729 Query 115699 GTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTTTACG 115758 | ||||| || |||||| || | ||| || ||| ||||||||| ||| |||| Sbjct 3510728 GCCCCAACGAGTGCCCTGGCCTGGCTGACTGCTACGGTGACGAGTTTGAGGCTCTGTACG 3510669 Query 115759 AAAGGTACGAGAAAGAGGG-AAGAGCCAAAAGGGTTGTGAAGGCGCAAGACCTTTGGCAT 115817 | | |||||||| |||||| ||| | | || | | | ||||| || | |||||| | Sbjct 3510668 AGAAGTACGAGAGAGAGGGTAAGGGTCGCAA-GTCTATCAAGGCCCAGAAGCTTTGGTAC 3510610 Query 115818 CATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGC-GTACAAAGATGCAGT 115876 ||||||| | ||| ||||| ||||| |||||| ||| ||||| ||| || | Sbjct 3510609 GCCATCCTTGAGGCCCAGACAGAGACCGGAA-ACCCTTTCATGCTCTACAAGGAT-CACT 3510552 Query 115877 -TTGTCGAAAGAGCAATCAAAAGAATTTCGGTA 115908 || |||||||| |||||||| | |||| Sbjct 3510551 GCAACCGCAAGAGCAACCAAAAGAACCTTGGTA 3510519 >seq1 Length=11790407 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| || ||||||||||| || ||||||||||| |||| | |||| Sbjct 6428044 GAGACGGAGAACAAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCG 6427985 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| | | ||| ||||||| | || || || Sbjct 6427984 GCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTC 6427925 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || |||||| | || | | |||| || ||| || || || || Sbjct 6427924 CTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGT 6427865 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 || || |||||||| || ||||||||||| Sbjct 6427864 GATGGTCTTGCCCGTCAGGGTCTTCACGAA 6427835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818124217451