Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 163 6e-35 seq2 163 6e-35 seq1 161 2e-34 >seq3 Length=8783590 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | || || || |||||||||||||| Sbjct 6944318 ACCACCACGGAGGCGGAGGACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 6944377 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || ||||| || Sbjct 6944378 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 6944437 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | || || ||||| |||| || || Sbjct 6944438 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 6944497 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 6944498 CTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 6944545 >seq2 Length=9166667 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| || || || | || || || ||||| |||||||| | Sbjct 2678213 ACCACCACGAAGGCGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGA 2678272 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || || || || ||||| || || |||||| || Sbjct 2678273 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGG 2678332 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| || |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 2678333 AATACCTTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCAC 2678392 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 2678393 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2678440 Score = 143 bits (158), Expect = 6e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || |||||||| || || || | || || || || ||||||||||| | | Sbjct 2677932 CCACCTCGGAGGCGAAGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAA 2677991 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| || || || || |||||||| | || || |||||| ||| Sbjct 2677992 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGAGGA 2678051 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||| || |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 2678052 ATACCTTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 2678111 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| ||||| ||||| || || | ||||| |||| Sbjct 2678112 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 2678148 Score = 95.1 bits (104), Expect = 3e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710 |||| |||| | | || ||||| |||| ||||| || |||| | || ||||||||| Sbjct 7431565 GTGAGTAATGATGATGACACCACCCTCGAACTTCTTGAGAGCCTTGGACAAGGCACCGAG 7431506 Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770 | || ||||| | ||||||| ||||||||||||||||| | |||||| | ||||| Sbjct 7431505 AGAGTCACGGTCAAGGTAGTTGGTAGGCTCATCAAGAACGATAAGATGGGGTCGCTGCCA 7431446 Query 315771 TAGAGC-GGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAG 315829 ||||| || | | || ||| | || ||||| ||||| ||||| ||||||| Sbjct 7431445 -AGAGCAAGCAGCCAAGACAGTCTTGACACGCTGACCACCGGACAGACCACGCATGCGAG 7431387 Query 315830 AATGAG 315835 | |||| Sbjct 7431386 AGTGAG 7431381 >seq1 Length=11790407 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || || || |||||||||||||| | Sbjct 6428053 ACCACCACGGAGACGGAGAACAAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 6427994 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || |||||||| || |||||||| || Sbjct 6427993 GAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGGGG 6427934 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| |||||||| | ||||| Sbjct 6427933 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGAC 6427874 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 6427873 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6427835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736772546374