Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2 140 2e-28 seq3 132 3e-26 seq1 111 1e-19 >seq2 Length=9166667 Score = 140 bits (154), Expect = 2e-28 Identities = 151/198 (76%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||| ||||| |||| ||| || |||| || |||||||| ||||| || Sbjct 2678477 CTCCTTTTGGATATTGTAGTCGGAGAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAA 2678536 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263 ||||| |||||||| || | ||| | |||||||| ||| ||||| ||| || | Sbjct 2678537 AATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTGACATT 2678596 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | || || || | ||| |||||||| | || || ||||| || ||||||||||| Sbjct 2678597 GT--CGATAGTATCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 2678654 Query 44324 ACGAAGATTTGCATGATG 44341 |||||||||||||||||| Sbjct 2678655 ACGAAGATTTGCATGATG 2678672 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||| ||||| |||| || || | || || Sbjct 2678232 ACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGAAAGGGTTCGGCCATCCTCA 2678291 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || ||||| |||||||| || | ||| | ||||||||| ||| Sbjct 2678292 AGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGG 2678351 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || |||||||| | || || ||||| Sbjct 2678352 ATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTG 2678411 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 2678412 CCGGTGAGGGTCTTGACGAAGATCTGCAT 2678440 >seq3 Length=8783590 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || |||||| ||||||||||| ||| || ||| | || || Sbjct 6944337 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 6944396 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || ||||| ||| Sbjct 6944397 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 6944456 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || |||||||| Sbjct 6944457 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 6944516 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| |||||||| ||||| || ||||||||| Sbjct 6944517 CCCGTAAGGGTCTTGACGAAAATCTGCATGATG 6944549 >seq1 Length=11790407 Score = 111 bits (122), Expect = 1e-19 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| ||| || | || || Sbjct 6428034 ACAAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG 6427975 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || |||||||| ||||| || || | || | || ||||| ||| Sbjct 6427974 AGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 6427915 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | ||| || ||||| | || || |||| Sbjct 6427914 ATCTTGGACTTGACATTGT--CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCT 6427857 Query 44307 TTCCCGTGAGGGTCTTCACGAA 44328 | ||||| |||||||||||||| Sbjct 6427856 TGCCCGTCAGGGTCTTCACGAA 6427835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989605883677