Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq2 150 4e-31 seq3 147 5e-30 >seq1 Length=11790407 Score = 152 bits (168), Expect = 1e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || ||| |||||||| Sbjct 6427834 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 6427893 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || |||||||| || ||| | Sbjct 6427894 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGATT 6427953 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 6427954 GATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 6428013 Query 178109 AGAATCAACACTGCATCTTGTT 178130 || || || ||||| |||||| Sbjct 6428014 GGAGTCTACTCTGCACCTTGTT 6428035 >seq2 Length=9166667 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||| |||||||| ||| || Sbjct 2678665 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCTGAT 2678606 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct 2678605 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAGCAG 2678546 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| || ||||| || || || | || || |||| || || || Sbjct 2678545 CGATTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTCTCCGACTACAATATC 2678486 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || ||||| || ||||| || Sbjct 2678485 CAAAAGGAGTCAACCCTCCATCTCGT 2678460 Score = 149 bits (164), Expect = 2e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || ||||||||||||||||| || |||||||||| Sbjct 2678148 TCGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGACACCATCG 2678089 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | Sbjct 2678088 ACAACGTCAAGTCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAGCAGCGACTCA 2678029 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || ||||| || ||||| | || ||| |||| || ||| | || || | Sbjct 2678028 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTTCCGACTACAACATTCAGAAGG 2677969 Query 178111 AATCAACACTGCATCTTGTT 178130 | ||||| || || |||||| Sbjct 2677968 AGTCAACCCTCCACCTTGTT 2677949 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||||||||||||||| || ||| Sbjct 2678437 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGAC 2678378 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct 2678377 ACCATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAGCAG 2678318 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| || || ||||| || ||||| | || ||| |||| || || || Sbjct 2678317 CGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTTCCGACTACAATATC 2678258 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || |||||| Sbjct 2678257 CAGAAGGAGTCGACCCTCCACCTTGTT 2678231 >seq3 Length=8783590 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || ||||||||||| |||||||| || ||| Sbjct 6944542 CAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 6944483 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || || || ||||||||||| Sbjct 6944482 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 6944423 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 6944422 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 6944363 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 6944362 CAGAAGGAGTCTACTCTTCACCTGGT 6944337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728408472114